Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 2.8e-188 661.8 325 100.0
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 1.6e-183 646.0 323 98.5
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 4.8e-180 634.4 325 95.7
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 2.4e-155 552.4 328 85.7
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.4e-152 543.1 323 85.1
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 7.9e-151 537.3 326 83.7
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 1.7e-145 519.6 327 79.8
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 3.8e-129 465.3 299 76.6
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 2.1e-127 459.5 281 77.2
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 3.6e-127 458.8 286 76.2
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 3.0e-126 455.7 299 73.9
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 4.0e-126 455.3 304 73.7
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 1.5e-125 453.4 305 73.1
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 4.4e-125 451.8 299 73.9
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 7.5e-125 451.1 295 73.6
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 7.5e-125 451.1 294 72.8
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 7.5e-125 451.1 296 74.0
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 1.3e-124 450.3 313 71.2
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 1.3e-124 450.3 298 71.5
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 2.8e-124 449.1 284 76.1
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 8.2e-124 447.6 308 69.5
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 1.4e-123 446.8 292 70.9
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 3.1e-123 445.7 308 69.5
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 3.1e-123 445.7 289 72.3
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 5.3e-123 444.9 311 71.4
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 7.0e-123 444.5 334 68.0
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 1.6e-122 443.4 282 74.8
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 2.7e-122 442.6 303 70.0
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 2.7e-122 442.6 284 73.6
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 1.3e-121 440.3 291 72.9
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 2.2e-121 439.5 293 72.4
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 2.9e-121 439.1 305 70.2
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 8.5e-121 437.6 316 67.1
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 7.2e-120 434.5 283 73.9
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.1e-119 433.0 326 65.3
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 1.4e-118 430.3 343 64.7
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 1.8e-118 429.9 274 75.2
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 3.0e-118 429.1 298 69.8
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 1.2e-117 427.2 289 71.6
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 1.5e-117 426.8 295 69.2
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 3.4e-117 425.6 294 70.1
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 5.7e-117 424.9 277 72.6
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 3.7e-116 422.2 295 68.1
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 4.8e-116 421.8 294 69.7
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 4.8e-116 421.8 287 70.7
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 1.8e-115 419.9 281 70.5
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 2.4e-115 419.5 276 72.1
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 2.4e-115 419.5 285 68.4
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 3.1e-115 419.1 296 67.2
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 4.1e-115 418.7 297 68.0
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 2.7e-114 416.0 320 64.1
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 1.3e-113 413.7 303 67.0
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 2.2e-113 412.9 301 67.1
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 3.8e-113 412.1 296 67.6
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 3.8e-113 412.1 275 70.9
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 6.5e-113 411.4 414 54.3
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 1.5e-112 410.2 298 66.8
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 3.2e-112 409.1 296 66.6
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 3.2e-112 409.1 304 65.8
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 5.5e-112 408.3 290 69.3
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 9.4e-112 407.5 305 65.2
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.6e-111 406.8 298 65.4
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 3.6e-111 405.6 281 68.0
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 6.1e-111 404.8 293 67.6
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 8.0e-111 404.4 309 65.7
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 1.0e-110 404.1 279 67.7
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 1.4e-110 403.7 297 65.7
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 4.0e-110 402.1 296 65.5
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 5.2e-110 401.7 274 71.2
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 1.5e-109 400.2 290 65.2
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 5.7e-109 398.3 306 65.4
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 8.3e-108 394.4 335 59.7
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 2.4e-107 392.9 281 68.3
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 7.7e-106 387.9 280 66.8
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 1.0e-105 387.5 331 60.1
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 1.7e-105 386.7 300 63.3
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 1.5e-104 383.6 289 65.7
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 3.5e-98 362.5 310 57.7
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 4.6e-98 362.1 304 61.2
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 8.9e-94 347.8 298 55.0
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 1.5e-93 347.1 291 57.4
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 2.6e-93 346.3 294 58.8
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 3.4e-93 345.9 296 54.7
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 2.7e-90 336.3 250 66.8
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 6.0e-90 335.1 328 57.0
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 7.5e-85 318.2 286 54.9
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 1.6e-79 300.4 200 74.0
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 4.7e-79 298.9 202 74.8
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 3.4e-77 292.7 233 63.5
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 3.2e-75 286.2 176 75.6
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 8.6e-73 278.1 164 78.7
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 5.6e-72 275.4 180 72.8
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 7.3e-72 275.0 164 81.1
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 1.1e-70 271.2 177 72.3
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 4.4e-69 265.8 280 48.6
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 2.3e-65 253.4 272 53.3
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 2.4e-62 243.4 296 41.2
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 5.3e-62 242.3 293 44.4
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 1.7e-60 237.3 177 61.6
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 1.3e-55 221.1 162 65.4
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 1.4e-51 207.6 142 71.8
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.1e-50 203.8 132 73.5
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 1.9e-32 144.1 76 80.3
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 9.7e-32 141.7 323 31.3
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 1.8e-30 137.5 75 78.7
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 2.6e-29 133.7 277 34.3
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 3.6e-26 123.2 333 28.2
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 3.6e-26 123.2 62 85.5
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 1.7e-23 114.4 89 59.6
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 2.3e-17 94.0 136 39.0
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 2.3e-17 94.0 155 38.7
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 1.7e-12 77.8 234 26.9
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 2.5e-11 73.9 170 33.5
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-11 72.8 68 47.1
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 4.4e-08 63.2 371 23.7


User provided reference genes

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