Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 7.5e-245 850.1 441 100.0
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 9.1e-243 843.2 441 99.1
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 4.3e-232 807.7 468 90.8
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 7.1e-211 737.3 442 87.1
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.2e-202 709.9 441 85.7
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 7.6e-197 690.6 396 90.7
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.3e-180 636.7 442 77.6
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 1.0e-164 583.9 457 68.7
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 5.0e-164 581.6 459 68.4
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 6.1e-162 574.7 411 72.5
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.7e-159 566.6 455 67.9
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 6.3e-159 564.7 520 61.2
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 1.2e-157 560.5 367 76.8
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 1.5e-157 560.1 445 67.9
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 1.9e-155 553.1 450 65.8
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 3.2e-155 552.4 479 63.5
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 4.2e-155 552.0 443 67.3
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 1.6e-154 550.1 450 67.1
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 3.0e-153 545.8 450 66.9
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 3.9e-153 545.4 452 65.9
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 4.4e-152 542.0 450 64.2
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 4.4e-152 542.0 452 64.2
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 7.4e-152 541.2 442 65.2
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 9.7e-152 540.8 450 64.2
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.3e-151 540.4 387 71.8
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 3.7e-151 538.9 449 65.7
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.1e-150 537.3 454 63.7
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.8e-150 536.6 464 63.1
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 3.1e-150 535.8 446 63.9
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 3.1e-150 535.8 446 64.8
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 4.1e-150 535.4 450 64.9
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 9.1e-150 534.3 456 63.6
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.0e-149 533.1 462 64.1
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 2.6e-149 532.7 447 64.7
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.6e-149 532.7 460 64.3
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 4.5e-149 531.9 450 64.2
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 1.0e-148 530.8 447 64.2
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 2.2e-148 529.6 441 65.8
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 2.2e-148 529.6 451 65.0
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 2.2e-148 529.6 406 68.5
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 3.8e-148 528.9 450 64.4
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 8.5e-148 527.7 469 62.9
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.4e-147 526.9 462 63.2
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.4e-147 526.9 416 67.3
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 1.9e-147 526.6 449 63.3
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 5.5e-147 525.0 443 64.1
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 7.2e-147 524.6 458 62.2
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 9.4e-147 524.2 359 73.5
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 1.2e-146 523.9 381 71.9
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 1.4e-145 520.4 450 62.7
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 1.8e-145 520.0 447 61.7
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 1.8e-145 520.0 371 72.0
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 8.8e-145 517.7 452 63.3
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 2.0e-144 516.5 339 75.8
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 5.7e-144 515.0 455 62.6
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 9.7e-144 514.2 455 63.5
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 9.7e-144 514.2 374 69.5
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.3e-143 513.8 459 62.3
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.7e-143 513.5 449 62.4
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.7e-143 512.3 455 61.5
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 3.1e-142 509.2 376 69.9
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 4.1e-142 508.8 452 61.1
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.0e-141 506.5 443 62.1
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 7.7e-141 504.6 473 60.7
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.3e-140 503.8 385 68.8
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 3.8e-140 502.3 413 65.4
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 1.6e-138 496.9 373 68.9
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 1.6e-138 496.9 448 60.9
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 1.6e-138 496.9 367 68.4
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 1.6e-138 496.9 373 68.1
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 2.1e-138 496.5 385 66.0
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 6.1e-138 495.0 376 68.6
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 8.0e-138 494.6 376 68.1
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 1.0e-137 494.2 444 59.9
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 6.8e-137 491.5 421 63.2
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 8.8e-137 491.1 448 60.3
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 3.4e-136 489.2 451 60.1
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 5.7e-136 488.4 402 63.2
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 6.3e-135 485.0 376 67.6
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 1.4e-134 483.8 451 60.3
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 1.2e-133 480.7 449 59.5
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 1.6e-133 480.3 362 68.0
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 1.6e-133 480.3 472 56.8
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 7.7e-133 478.0 443 59.6
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 1.7e-132 476.9 371 66.6
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 2.2e-132 476.5 444 59.7
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 8.5e-132 474.6 440 58.2
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 1.5e-131 473.8 438 58.2
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.9e-131 473.4 349 67.9
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.9e-131 473.4 445 60.0
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 4.2e-131 472.2 463 59.4
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 9.4e-131 471.1 440 58.4
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 3.6e-130 469.2 440 58.6
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 6.1e-130 468.4 355 65.9
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 1.3e-127 460.7 346 68.5
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 1.3e-127 460.7 346 68.5
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 1.7e-127 460.3 353 65.7
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 9.5e-123 444.5 302 72.5
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 4.7e-122 442.2 341 66.3
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 8.0e-122 441.4 334 65.9
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 4.0e-121 439.1 331 66.5
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 5.2e-121 438.7 349 65.6
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 1.3e-119 434.1 333 65.8
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 1.0e-116 424.5 450 55.1
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 3.3e-115 419.5 328 68.3
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.4e-110 404.1 326 66.3
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 6.6e-108 395.2 315 68.9
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 7.3e-107 391.7 253 77.5
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 4.0e-105 386.0 302 62.3
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 7.1e-102 375.2 354 53.7
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 8.6e-100 368.2 299 67.2
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 7.3e-99 365.2 368 51.6
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 1.1e-94 351.3 346 52.6
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 6.6e-92 342.0 245 69.8
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 2.1e-90 337.0 430 44.4
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 5.8e-88 328.9 242 67.8
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 1.5e-83 314.3 261 58.6
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 1.6e-82 310.8 201 75.6
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 1.4e-81 307.8 346 54.9
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 1.2e-69 268.1 289 51.2
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 1.2e-69 268.1 278 51.1
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 2.3e-68 263.8 350 43.1
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 3.0e-68 263.5 283 49.8
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 9.6e-67 258.5 283 51.2
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 5.3e-65 252.7 186 66.1
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 3.9e-60 236.5 170 70.0
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 1.6e-53 214.5 238 52.1
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 3.8e-47 193.4 206 53.4
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 6.3e-42 176.0 206 54.9
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 7.4e-35 152.5 331 34.7
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 1.1e-30 138.7 121 60.3
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 2.6e-27 127.5 83 73.5
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.7e-26 124.8 83 72.3
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 4.8e-26 123.2 76 73.7
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 6.1e-21 106.3 72 70.8
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.4e-20 105.1 90 64.4
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 2.6e-19 100.9 72 68.1
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 5.9e-16 89.7 99 52.5
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 5.4e-09 66.6 76 53.9
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.2e-08 65.5 57 59.6
MSTRG.17096 Avicennia marina HOM05D005239 ORTHO05D006698 1.9e-06 58.2 37 78.4


User provided reference genes

Program Settings