Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 1.1e-210 736.5 386 100.0
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 3.4e-209 731.5 386 99.2
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 6.0e-206 720.7 386 97.4
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 2.3e-189 665.6 390 91.8
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 7.6e-185 650.6 424 81.6
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.8e-173 612.8 391 85.4
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 1.4e-138 496.9 392 67.9
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 6.5e-128 461.5 385 64.7
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 1.2e-126 457.2 394 62.2
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 8.0e-126 454.5 335 71.0
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 2.3e-125 453.0 357 66.9
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 4.0e-125 452.2 359 66.9
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 7.5e-124 448.0 385 62.1
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 1.3e-123 447.2 391 62.4
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 1.8e-122 443.4 339 69.0
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 3.3e-119 432.6 365 62.7
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 5.6e-119 431.8 384 60.9
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 6.1e-118 428.3 393 59.3
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 1.0e-117 427.6 378 61.1
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 1.8e-117 426.8 386 60.9
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 8.9e-117 424.5 379 59.9
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 5.7e-116 421.8 377 58.6
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 9.8e-116 421.0 400 57.0
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 9.8e-116 421.0 381 59.8
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 9.8e-116 421.0 376 59.6
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 2.2e-115 419.9 335 63.6
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 2.9e-115 419.5 345 63.8
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.9e-115 419.5 377 58.4
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 4.9e-115 418.7 353 62.0
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 4.9e-115 418.7 323 65.6
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 6.4e-115 418.3 318 67.0
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 6.4e-115 418.3 335 63.9
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 6.4e-115 418.3 352 63.4
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 1.8e-114 416.8 383 58.7
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 2.4e-114 416.4 350 64.0
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 3.2e-114 416.0 370 60.0
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 5.4e-114 415.2 314 67.2
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 5.4e-114 415.2 372 60.8
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 5.4e-114 415.2 345 62.9
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 9.2e-114 414.5 390 57.9
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 1.6e-113 413.7 376 58.2
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 4.6e-113 412.1 379 59.4
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 6.0e-113 411.8 346 62.1
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 7.8e-113 411.4 378 58.2
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 1.7e-112 410.2 314 67.2
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 2.3e-112 409.8 389 57.6
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 3.0e-112 409.5 335 63.0
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 5.0e-112 408.7 364 59.1
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 8.6e-112 407.9 334 62.9
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 4.3e-111 405.6 366 57.1
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 1.2e-110 404.1 394 56.6
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 1.2e-110 404.1 336 62.2
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 1.2e-110 404.1 347 59.1
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 1.6e-110 403.7 377 58.1
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 2.8e-110 402.9 357 59.9
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 3.6e-110 402.5 377 56.2
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 4.7e-110 402.1 385 57.4
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 4.7e-110 402.1 385 57.4
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 1.1e-109 401.0 380 57.1
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 1.1e-109 401.0 343 61.8
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 2.3e-109 399.8 392 55.9
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 8.9e-109 397.9 405 53.8
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 8.9e-109 397.9 332 61.1
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 2.0e-108 396.7 306 65.4
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 2.6e-108 396.4 383 57.2
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 7.5e-108 394.8 333 61.3
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 3.7e-107 392.5 368 56.2
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 6.4e-107 391.7 336 59.5
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 6.4e-107 391.7 358 57.5
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.4e-106 390.6 392 54.6
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 7.0e-106 388.3 359 55.7
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 7.0e-106 388.3 357 56.0
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 2.0e-105 386.7 383 56.1
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 2.0e-105 386.7 343 58.9
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 4.6e-105 385.6 383 55.9
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 1.3e-104 384.0 325 60.3
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 2.3e-104 383.3 321 59.8
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 3.0e-104 382.9 329 59.0
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 6.6e-104 381.7 354 60.7
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 3.1e-101 372.9 304 61.8
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 5.8e-100 368.6 348 63.5
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 2.9e-99 366.3 335 60.6
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 1.1e-98 364.4 372 54.8
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.2e-97 360.9 305 60.0
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 8.6e-96 354.8 378 53.2
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.5e-95 354.0 256 68.8
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 2.5e-95 353.2 313 61.3
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 7.3e-95 351.7 345 55.9
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.4e-93 346.7 378 52.6
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 6.4e-91 338.6 279 62.7
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 1.9e-90 337.0 230 74.8
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 1.2e-89 334.3 387 48.8
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 3.5e-89 332.8 245 69.0
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 3.0e-88 329.7 303 53.8
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.5e-87 327.4 369 52.8
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 3.6e-86 322.8 320 54.1
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 6.9e-85 318.5 313 56.2
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 2.6e-84 316.6 336 47.9
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 6.4e-83 312.0 285 61.1
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 4.2e-82 309.3 375 44.0
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 2.1e-78 297.0 296 58.8
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 9.3e-74 281.6 261 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 1.6e-73 280.8 272 48.9
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 5.6e-71 272.3 197 69.5
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 2.7e-65 253.4 248 55.6
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 7.9e-65 251.9 268 54.9
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 6.7e-64 248.8 185 65.9
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 5.3e-61 239.2 229 57.2
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 4.5e-60 236.1 246 56.1
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 8.4e-59 231.9 201 60.2
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 3.9e-56 223.0 159 71.7
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 8.7e-56 221.9 200 62.0
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 1.4e-53 214.5 304 38.2
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 3.6e-49 199.9 211 58.8
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 2.6e-44 183.7 280 37.9
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 1.4e-40 171.4 292 33.6
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 2.2e-38 164.1 137 60.6
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 4.4e-31 139.8 224 46.0
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 9.4e-26 122.1 105 58.1
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 4.4e-23 113.2 84 73.8
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 3.7e-22 110.2 84 70.2
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 1.6e-20 104.8 240 33.8
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 4.0e-16 90.1 124 46.8
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 1.2e-12 78.6 62 59.7
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 2.6e-07 60.8 45 68.9


User provided reference genes

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