Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 5.7e-192 674.1 343 100.0
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 8.2e-191 670.2 343 99.4
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 3.3e-179 631.7 343 94.5
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 2.6e-168 595.5 345 90.1
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 3.9e-164 581.6 344 87.8
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 4.6e-157 558.1 353 82.7
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 6.0e-157 557.8 333 84.1
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 6.2e-154 547.7 329 82.7
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 5.2e-153 544.7 343 79.9
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 4.4e-152 541.6 330 81.5
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 1.3e-151 540.0 339 79.6
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.1e-150 537.0 342 80.4
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 1.9e-150 536.2 340 80.6
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.9e-150 536.2 355 77.2
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.9e-150 536.2 355 77.2
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 3.2e-150 535.4 328 81.7
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 7.1e-150 534.3 332 80.1
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 2.7e-149 532.3 328 79.9
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 4.6e-149 531.6 332 80.4
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 4.6e-149 531.6 336 79.8
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 7.8e-149 530.8 328 79.6
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 1.0e-148 530.4 328 79.6
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.3e-148 530.0 346 77.5
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 1.7e-148 529.6 328 79.6
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 2.3e-148 529.3 332 80.1
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 2.3e-148 529.3 331 78.9
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 2.3e-148 529.3 328 80.5
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 3.0e-148 528.9 328 79.6
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 3.9e-148 528.5 328 79.3
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 6.6e-148 527.7 328 80.2
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 8.6e-148 527.3 328 79.3
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.9e-147 526.2 343 77.8
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.9e-147 526.2 346 77.5
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 3.3e-147 525.4 329 79.9
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.3e-147 525.4 355 76.1
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 4.3e-147 525.0 331 77.9
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 7.3e-147 524.2 332 79.8
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 7.3e-147 524.2 328 79.3
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 7.3e-147 524.2 333 79.0
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.3e-147 524.2 343 77.3
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 9.5e-147 523.9 345 77.4
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 9.5e-147 523.9 337 78.0
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 1.2e-146 523.5 325 81.8
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.2e-146 523.5 333 78.7
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 1.6e-146 523.1 309 82.5
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.6e-146 523.1 345 77.4
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 2.1e-146 522.7 332 78.6
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 2.8e-146 522.3 335 77.9
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 2.8e-146 522.3 331 77.6
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 3.6e-146 521.9 336 78.3
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 6.2e-146 521.2 341 77.4
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 8.1e-146 520.8 328 78.4
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.1e-145 520.4 331 77.9
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.4e-145 520.0 339 76.4
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 1.8e-145 519.6 332 77.4
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.1e-145 518.8 333 78.1
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 3.1e-145 518.8 333 77.8
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 4.0e-145 518.5 332 78.3
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 4.0e-145 518.5 334 77.2
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 8.9e-145 517.3 339 75.8
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.2e-144 516.9 351 73.8
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.2e-144 516.9 306 81.7
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.5e-144 516.5 333 77.5
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.5e-144 516.5 333 78.4
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.5e-144 516.5 341 75.7
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 3.4e-144 515.4 334 76.6
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 4.4e-144 515.0 306 81.4
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 5.8e-144 514.6 330 77.3
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 7.6e-144 514.2 337 77.4
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 7.6e-144 514.2 344 76.5
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 9.9e-144 513.8 344 74.7
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.3e-143 513.5 360 74.2
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.7e-143 513.1 332 77.7
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 4.9e-143 511.5 366 73.0
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 6.4e-143 511.1 324 79.9
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.1e-141 506.1 340 74.4
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 3.5e-141 505.4 381 66.7
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 4.6e-141 505.0 291 84.2
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 4.6e-141 505.0 329 75.4
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 6.0e-141 504.6 408 65.9
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 1.0e-140 503.8 309 79.9
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 2.3e-140 502.7 299 80.9
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 3.9e-140 501.9 340 75.9
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 2.5e-139 499.2 331 74.9
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 5.6e-139 498.0 336 75.6
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.6e-138 496.5 339 75.5
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 6.2e-138 494.6 336 73.5
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 9.0e-137 490.7 284 81.7
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 3.4e-136 488.8 306 79.1
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 7.6e-136 487.6 312 79.2
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 1.7e-135 486.5 315 76.2
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 6.4e-135 484.6 290 79.0
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.4e-134 483.4 341 73.9
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 2.4e-134 482.6 270 86.7
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 3.5e-133 478.8 285 78.6
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.5e-131 473.4 369 71.3
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 3.3e-131 472.2 334 73.1
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.3e-130 470.3 346 71.1
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 1.3e-130 470.3 358 67.0
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 2.8e-130 469.2 343 68.8
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 8.1e-130 467.6 272 81.6
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 3.1e-129 465.7 327 72.2
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 8.4e-127 457.6 331 70.7
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.1e-126 457.2 270 81.1
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 2.7e-125 452.6 326 73.6
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.5e-123 446.8 322 73.6
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 4.3e-123 445.3 293 75.8
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 9.6e-123 444.1 331 71.6
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 2.1e-122 443.0 305 75.7
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 4.9e-119 431.8 298 68.8
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 2.1e-114 416.4 322 62.4
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 6.2e-114 414.8 291 75.9
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 7.6e-112 407.9 287 69.7
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.7e-111 406.8 265 77.4
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 9.3e-110 401.0 272 70.2
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 2.5e-107 392.9 294 70.7
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 6.9e-105 384.8 277 72.2
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 4.5e-104 382.1 258 74.4
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.8e-100 370.2 326 61.0
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.4e-97 360.5 228 78.9
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.0e-87 327.8 230 75.7
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 3.8e-87 325.9 224 76.3
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 8.8e-68 261.5 353 49.0
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 3.4e-67 259.6 156 88.5
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.6e-61 240.7 153 73.2
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.8e-61 240.0 139 81.3
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 8.9e-60 235.0 139 82.0
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 5.9e-56 222.2 184 66.3
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 2.1e-53 213.8 132 74.2
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.4e-49 201.1 108 82.4
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 6.0e-48 195.7 108 78.7
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 3.9e-39 166.4 129 60.5
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 3.9e-39 166.4 276 41.7
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 1.8e-36 157.5 112 65.2
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.0e-31 141.7 308 31.2
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.0e-31 141.7 117 59.0
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 5.8e-27 125.9 163 47.9
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 5.4e-25 119.4 86 66.3
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.5e-22 111.3 318 31.1
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 3.3e-22 110.2 87 58.6
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.4e-20 104.0 71 69.0
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 2.0e-19 100.9 91 60.4
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 2.6e-19 100.5 93 61.3
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 3.8e-18 96.7 52 84.6
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 8.4e-18 95.5 53 88.7
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 4.2e-17 93.2 53 75.5
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 8.7e-15 85.5 53 73.6
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 1.9e-14 84.3 81 48.1
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 6.4e-10 69.3 37 78.4
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 5.1e-07 59.7 31 87.1
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 6.7e-07 59.3 60 60.0


User provided reference genes

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