Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 4.3e-181 637.9 323 100.0
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 1.5e-178 629.4 323 98.5
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 1.3e-174 616.3 323 95.4
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 3.0e-174 615.1 322 95.3
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.6e-159 566.2 348 85.1
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 7.8e-159 563.9 290 97.2
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 5.4e-152 541.2 322 82.3
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 7.1e-152 540.8 288 93.4
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 7.4e-149 530.8 324 80.6
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 9.6e-149 530.4 325 81.2
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 1.4e-147 526.6 324 79.3
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 3.1e-147 525.4 321 81.3
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 1.5e-146 523.1 323 80.5
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 1.5e-146 523.1 323 79.6
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 2.0e-146 522.7 323 79.9
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 1.3e-145 520.0 320 79.4
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 1.2e-143 513.5 334 77.5
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 3.5e-143 511.9 320 78.4
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 1.8e-142 509.6 320 77.8
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 1.8e-142 509.6 311 80.4
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 2.5e-141 505.8 325 77.8
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 3.3e-141 505.4 319 77.1
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 4.3e-141 505.0 326 77.3
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 5.6e-141 504.6 320 76.9
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 1.6e-140 503.1 316 78.8
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 4.8e-140 501.5 326 77.0
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 2.4e-139 499.2 326 77.3
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 1.3e-137 493.4 325 76.9
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 2.2e-137 492.7 317 76.0
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 6.5e-137 491.1 339 74.3
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 1.1e-136 490.3 328 75.3
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 1.4e-136 490.0 325 75.7
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 7.1e-136 487.6 325 74.5
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 7.1e-136 487.6 317 76.7
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 1.6e-135 486.5 319 75.2
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 3.5e-135 485.3 315 75.6
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 6.0e-135 484.6 325 74.2
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 6.0e-135 484.6 317 75.7
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 2.3e-134 482.6 325 75.7
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 3.9e-134 481.9 345 71.6
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 5.1e-134 481.5 322 74.8
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 1.5e-133 479.9 317 74.1
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 1.9e-133 479.6 316 75.6
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 1.9e-133 479.6 324 74.4
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 3.3e-133 478.8 313 73.8
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 7.4e-133 477.6 328 72.9
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 7.4e-133 477.6 317 74.1
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 9.6e-133 477.2 320 73.8
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 9.6e-133 477.2 317 70.7
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 3.7e-132 475.3 362 67.4
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 3.7e-132 475.3 332 71.1
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 4.8e-132 474.9 384 64.8
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 1.1e-131 473.8 313 75.4
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 1.4e-131 473.4 314 75.2
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 1.8e-131 473.0 325 72.6
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 4.1e-131 471.9 320 72.8
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 1.2e-130 470.3 320 72.5
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 1.2e-130 470.3 310 75.5
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 2.6e-130 469.2 314 73.6
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 3.4e-130 468.8 326 73.6
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 5.9e-130 468.0 325 73.2
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 7.6e-130 467.6 319 72.1
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 1.0e-129 467.2 326 70.9
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 1.3e-129 466.8 316 73.7
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 1.7e-129 466.5 325 70.8
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 2.2e-129 466.1 316 73.4
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 2.9e-129 465.7 314 73.9
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 2.9e-129 465.7 325 72.9
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 6.5e-129 464.5 314 73.2
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 8.5e-129 464.2 314 73.2
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 1.9e-128 463.0 377 65.5
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 3.2e-128 462.2 314 72.6
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 3.2e-128 462.2 320 72.5
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 4.2e-128 461.8 314 72.9
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 5.5e-128 461.5 325 71.4
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 7.2e-128 461.1 314 72.9
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 7.2e-128 461.1 314 72.9
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 7.2e-128 461.1 343 69.4
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 2.7e-127 459.1 317 74.4
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 4.6e-127 458.4 323 69.0
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 6.1e-127 458.0 351 66.7
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 7.9e-127 457.6 316 71.5
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 1.0e-126 457.2 315 72.1
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.0e-126 457.2 314 71.0
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 2.3e-126 456.1 327 70.0
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 1.1e-125 453.8 306 73.9
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 1.5e-125 453.4 314 71.7
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 1.9e-125 453.0 323 69.7
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 4.3e-125 451.8 357 65.8
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 1.3e-124 450.3 321 71.0
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 2.2e-124 449.5 281 78.6
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 3.7e-124 448.7 320 67.8
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 8.2e-124 447.6 317 70.7
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 9.1e-123 444.1 315 70.8
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 5.0e-121 438.3 317 71.3
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 5.5e-120 434.9 307 69.4
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 9.4e-120 434.1 324 70.4
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 4.6e-119 431.8 329 68.1
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 2.3e-118 429.5 254 82.3
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 6.7e-118 427.9 316 67.7
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 3.7e-116 422.2 258 81.4
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 1.8e-115 419.9 265 75.8
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 9.1e-115 417.5 277 75.8
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 1.1e-112 410.6 252 78.6
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 6.1e-103 378.3 306 61.1
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 9.7e-101 370.9 256 73.0
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 9.7e-101 370.9 317 59.0
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 2.7e-98 362.8 330 55.5
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 2.6e-93 346.3 257 65.4
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 1.3e-92 344.0 196 84.7
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 3.1e-91 339.3 306 59.8
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.3e-89 334.0 292 62.0
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 3.8e-89 332.4 288 61.5
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 7.2e-88 328.2 327 56.9
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 1.0e-86 324.3 205 74.1
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 2.6e-85 319.7 326 54.3
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 1.1e-83 314.3 284 57.4
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 4.1e-83 312.4 334 50.0
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 3.6e-79 299.3 198 75.8
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 4.1e-75 285.8 176 77.3
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 5.4e-75 285.4 325 49.2
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.0e-73 281.2 233 62.7
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 2.9e-68 263.1 186 71.0
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 2.4e-67 260.0 350 40.9
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 3.9e-65 252.7 185 69.2
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 7.3e-64 248.4 198 68.2
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 2.0e-61 240.4 343 41.7
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 5.8e-61 238.8 164 72.6
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 3.5e-58 229.6 132 83.3
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.2e-55 221.1 200 59.5
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 4.4e-53 212.6 353 40.2
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 2.2e-52 210.3 145 73.1
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 1.3e-49 201.1 285 39.3
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.1e-48 198.0 124 75.8
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.5e-48 196.8 125 73.6
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 3.6e-47 193.0 121 74.4
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 1.4e-46 191.0 255 42.4
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 9.0e-46 188.3 151 64.9
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 5.1e-41 172.6 359 34.0
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.8e-33 147.5 129 59.7
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 2.3e-33 147.1 122 61.5
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.3e-31 141.4 315 34.9
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 6.4e-28 129.0 129 55.8
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 9.3e-27 125.2 83 79.5
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 5.6e-24 115.9 69 81.2
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 1.6e-23 114.4 84 71.4
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 1.1e-19 101.7 80 62.5
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 7.1e-19 99.0 73 69.9
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.6e-10 71.2 41 80.5


User provided reference genes

Program Settings