Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 6.4e-82 307.4 157 100.0
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.8e-71 272.7 157 87.9
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.5e-65 252.3 166 83.7
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 2.9e-58 228.8 181 70.7
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.2e-56 223.4 173 72.3
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 9.1e-52 207.2 185 65.9
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.0e-50 203.8 181 65.7
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 1.0e-50 203.8 185 66.5
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.7e-50 203.0 186 64.0
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.4e-49 199.9 186 64.0
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.4e-49 199.9 174 67.8
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 3.2e-49 198.7 184 62.0
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 4.2e-49 198.4 175 67.4
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 2.1e-48 196.1 192 62.5
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.4e-44 182.6 177 60.5
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.7e-42 176.4 177 60.5
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 8.5e-42 174.1 179 55.9
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.5e-41 172.6 174 56.9
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.2e-41 172.2 179 56.4
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 3.0e-39 165.6 169 55.0
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.5e-38 163.3 161 57.8
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 5.7e-38 161.4 174 55.2
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.2e-37 159.5 169 54.4
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 8.2e-37 157.5 179 53.1
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 1.4e-36 156.8 164 57.3
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.4e-36 156.8 170 55.3
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 9.1e-36 154.1 176 52.3
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 2.0e-35 152.9 167 52.7
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.6e-35 152.5 169 56.2
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 3.5e-35 152.1 167 52.7
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 4.5e-35 151.8 170 52.9
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.7e-34 149.8 183 45.4
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 5.0e-34 148.3 177 50.8
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.5e-33 146.7 168 51.2
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.5e-33 146.7 175 53.1
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 1.5e-33 146.7 159 52.2
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 2.5e-33 146.0 166 51.2
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 9.4e-33 144.1 169 52.1
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.6e-32 143.3 169 49.7
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 4.7e-32 141.7 193 51.8
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 4.7e-32 141.7 162 51.2
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.1e-32 141.4 167 46.7
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.8e-31 139.8 210 45.7
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.8e-31 139.8 185 49.2
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 3.0e-31 139.0 167 49.1
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.0e-31 138.7 170 47.1
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 5.2e-31 138.3 178 47.2
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 8.8e-31 137.5 167 47.3
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 1.5e-30 136.7 179 45.3
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 2.6e-30 136.0 183 47.5
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.4e-30 135.2 170 45.9
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 5.7e-30 134.8 169 45.6
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 7.5e-30 134.4 144 54.9
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 7.5e-30 134.4 186 46.2
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 9.7e-30 134.0 181 47.0
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.3e-29 133.7 172 45.3
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 1.7e-29 133.3 163 51.5
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.7e-29 133.3 177 48.0
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.7e-29 133.3 190 48.9
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.7e-29 133.3 182 44.5
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 2.2e-29 132.9 160 46.9
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.7e-29 132.1 165 46.1
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 4.8e-29 131.7 177 46.9
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 6.3e-29 131.3 175 43.4
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 6.3e-29 131.3 179 44.1
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 6.3e-29 131.3 184 42.9
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 8.2e-29 131.0 175 47.4
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 8.2e-29 131.0 199 44.7
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.1e-28 130.6 172 46.5
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.1e-28 130.6 180 45.6
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.4e-28 130.2 175 44.6
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.4e-28 130.2 179 44.7
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-28 129.4 167 43.7
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 2.4e-28 129.4 167 46.7
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 2.4e-28 129.4 169 44.4
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 3.1e-28 129.0 175 45.1
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.1e-28 129.0 188 43.6
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 3.1e-28 129.0 176 47.2
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 3.1e-28 129.0 158 46.8
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.1e-28 128.6 157 46.5
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 5.3e-28 128.3 175 42.9
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 5.3e-28 128.3 160 43.8
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 7.0e-28 127.9 152 50.7
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.0e-28 127.9 188 44.1
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 7.0e-28 127.9 188 44.1
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 9.1e-28 127.5 172 50.0
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 9.1e-28 127.5 170 45.3
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.2e-27 127.1 174 43.7
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.2e-27 127.1 175 44.0
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.2e-27 127.1 172 42.4
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.2e-27 127.1 175 44.0
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 1.2e-27 127.1 172 42.4
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 1.6e-27 126.7 176 43.8
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 1.6e-27 126.7 176 43.8
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 2.0e-27 126.3 186 44.1
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 2.0e-27 126.3 154 51.3
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.7e-27 125.9 179 42.5
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 3.5e-27 125.6 170 52.4
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.5e-27 125.6 180 45.0
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.7e-27 124.4 168 42.9
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.0e-26 124.0 177 46.3
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 1.3e-26 123.6 181 44.2
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 1.7e-26 123.2 183 45.4
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 2.2e-26 122.9 185 43.8
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 5.0e-26 121.7 181 43.1
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 5.0e-26 121.7 171 43.9
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 6.5e-26 121.3 173 41.6
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 8.5e-26 120.9 171 47.4
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.1e-25 120.6 175 43.4
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.1e-25 120.6 175 46.3
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.5e-25 120.2 172 43.6
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.2e-25 119.0 176 42.6
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 3.2e-25 119.0 159 42.8
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.2e-25 118.6 179 45.8
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 5.5e-25 118.2 178 41.6
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 9.4e-25 117.5 185 40.5
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.2e-24 117.1 185 41.1
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 4.7e-24 115.2 167 43.1
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 4.7e-24 115.2 186 41.4
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.7e-24 115.2 186 41.4
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.7e-24 115.2 186 41.4
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 6.1e-24 114.8 166 42.8
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.8e-23 113.2 161 44.7
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.8e-23 113.2 161 47.8
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 2.3e-23 112.8 185 43.8
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 5.2e-23 111.7 165 44.2
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.2e-23 111.7 179 41.3
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-22 110.5 154 41.6
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-22 110.5 183 41.5
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 2.0e-22 109.8 132 46.2
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 2.0e-22 109.8 165 41.2
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 3.4e-22 109.0 166 45.8
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 5.7e-22 108.2 171 43.9
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.5e-22 107.8 151 43.0
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 9.8e-22 107.5 168 41.1
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.3e-21 107.1 173 40.5
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.3e-21 107.1 169 40.2
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.8e-21 105.9 162 41.4
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 3.7e-21 105.5 170 39.4
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 4.8e-21 105.1 174 40.2
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-20 104.0 169 39.6
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-20 104.0 169 39.6
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-20 104.0 169 39.6
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 1.8e-20 103.2 167 39.5
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.0e-18 97.4 157 40.8
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.0e-18 95.1 135 43.0
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 6.5e-18 94.7 152 42.1
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 5.5e-17 91.7 95 52.6
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 7.2e-17 91.3 158 40.5
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-16 89.7 152 40.1
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.3e-15 86.3 136 42.6
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 2.0e-14 83.2 211 31.8
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.4e-14 82.0 99 44.4
CAN.G69.6 Capsicum annuum HOM05D003790 ORTHO05D004481 3.7e-13 79.0 65 70.8
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 6.3e-13 78.2 175 35.4
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-12 75.9 106 43.4
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 4.1e-12 75.5 104 41.3
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 5.9e-11 71.6 137 40.1
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-10 70.5 106 40.6
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.7e-10 70.1 128 41.4
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.7e-10 70.1 163 35.0
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 2.3e-10 69.7 168 36.3
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 2.3e-10 69.7 196 34.2
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.9e-10 69.3 89 48.3
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 2.9e-10 69.3 135 37.8
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.9e-09 66.6 164 31.7
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.3e-09 65.9 139 36.7
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 3.3e-09 65.9 183 30.6
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-08 63.9 89 39.3
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 2.8e-08 62.8 154 30.5
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 1.8e-07 60.1 169 30.8
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 2.3e-07 59.7 218 28.0
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 3.0e-07 59.3 126 33.3
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 3.0e-07 59.3 207 32.9
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.4e-06 55.8 72 45.8
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 5.8e-06 55.1 171 31.6
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 9.8e-06 54.3 48 52.1


User provided reference genes

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