Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g031410 Solanum pennellii HOM05D008757 ORTHO05D010583 7.3e-209 730.3 371 100.0
Solyc01g079630.3 Solanum lycopersicum HOM05D008757 ORTHO05D010583 8.1e-200 700.3 376 95.7
Nitab4.5_0000906g0100 Nicotiana tabacum HOM05D008757 ORTHO05D010583 1.3e-128 463.8 398 66.6
Peaxi162Scf00001g00251 Petunia axillaris HOM05D008757 ORTHO05D010583 1.8e-122 443.4 370 66.8
Nitab4.5_0000116g0030 Nicotiana tabacum HOM05D008757 ORTHO05D010583 2.1e-115 419.9 336 71.4
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 5.1e-53 212.6 370 38.6
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 3.1e-50 203.4 350 38.3
QL12p028983 Quercus lobata HOM05D008757 ORTHO05D010583 1.5e-44 184.5 366 36.6
Actinidia25837 Actinidia chinensis HOM05D008757 ORTHO05D010583 2.8e-43 180.3 372 34.1
Migut.D00097 Erythranthe guttata HOM05D008757 ORTHO05D010583 5.3e-42 176.0 339 36.6
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 2.9e-40 170.2 367 34.9
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 4.2e-39 166.4 350 32.6
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 7.9e-38 162.2 318 35.5
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 6.7e-37 159.1 380 31.3
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 6.7e-37 159.1 284 35.6
Gohir.A11G110800 Gossypium hirsutum HOM05D008757 ORTHO05D010583 1.3e-35 154.8 373 32.7
Cc08_g11800 Coffea canephora HOM05D008757 ORTHO05D010583 8.2e-35 152.1 301 38.2
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 2.4e-34 150.6 401 32.2
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 5.3e-34 149.4 291 35.1
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 6.9e-34 149.1 403 32.5
SGA_v2.0_scaffold334G49056 Striga asiatica HOM05D008757 ORTHO05D010583 7.6e-33 145.6 336 33.0
Gohir.D11G115900 Gossypium hirsutum HOM05D008757 ORTHO05D010583 2.2e-32 144.1 337 32.9
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 2.9e-32 143.7 406 29.1
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 5.0e-32 142.9 353 31.7
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 2.7e-30 137.1 417 29.7
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 8.2e-27 125.6 273 34.8
Haze_05014 Corylus avellana HOM05D008757 ORTHO05D010583 2.4e-26 124.0 342 29.2
Hma1.2p1_1302F.1_g274300 Hydrangea macrophylla HOM05D008757 ORTHO05D010583 4.5e-25 119.8 172 40.1
Dinv10074 Davidia involucrata HOM05D008757 ORTHO05D010583 4.2e-23 113.2 174 37.9
Prupe.8G269900 Prunus persica HOM05D008757 ORTHO05D010583 8.8e-21 105.5 181 37.0
GSVIVG01028089001 Vitis vinifera HOM05D008757 ORTHO05D010583 1.5e-20 104.8 370 31.1
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 2.0e-20 104.4 323 27.9
Aqoxy3G01114 Aquilegia oxysepala HOM05D008757 ORTHO05D010583 1.7e-19 101.3 353 28.0
MD11G1316900 Malus domestica HOM05D008757 ORTHO05D010583 3.2e-15 87.0 151 34.4
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 1.4e-13 81.6 227 25.6
FAN08G1681 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.8e-13 81.3 179 29.1
FAN18G1448 Fragaria x ananassa HOM05D008757 ORTHO05D010583 2.3e-13 80.9 179 29.1
RcHm_v2.0_Chr7g0241871 Rosa chinensis HOM05D008757 ORTHO05D010583 2.3e-13 80.9 171 31.0
FvH4_5g39560 Fragaria vesca HOM05D008757 ORTHO05D010583 3.0e-13 80.5 177 29.4
FAN13G0940 Fragaria x ananassa HOM05D008757 ORTHO05D010583 2.6e-12 77.4 168 30.4
FAN04G1474 Fragaria x ananassa HOM05D008757 ORTHO05D010583 5.7e-12 76.3 168 31.5
BolC8t51315H Brassica oleracea HOM05D012658 ORTHO05D010583 1.1e-10 72.0 147 34.0
BraA09t40861Z Brassica rapa HOM05D012658 ORTHO05D010583 1.8e-10 71.2 143 34.3
BcaC07g40736 Brassica carinata HOM05D012658 ORTHO05D010583 2.4e-10 70.9 155 32.9
BcaC07g40779 Brassica carinata HOM05D012658 ORTHO05D010583 4.1e-10 70.1 144 32.6
A09p54480 Brassica napus HOM05D012658 ORTHO05D010583 5.3e-10 69.7 143 34.3
C08p37370 Brassica napus HOM05D012658 ORTHO05D010583 2.0e-09 67.8 147 33.3
THA.LOC104817467 Tarenaya hassleriana HOM05D012658 ORTHO05D010583 2.6e-09 67.4 143 30.8
Thecc.01G310700 Theobroma cacao HOM05D008757 ORTHO05D010583 7.7e-09 65.9 111 35.1
Carub.0005s2928 Capsella rubella HOM05D012658 ORTHO05D010583 1.0e-08 65.5 143 34.3
AT3G62620 Arabidopsis thaliana HOM05D012658 ORTHO05D010583 3.2e-07 60.5 143 30.1
A05p34600 Brassica napus HOM05D012658 ORTHO05D010583 5.5e-07 59.7 150 30.7
CARHR172890 Cardamine hirsuta HOM05D012658 ORTHO05D010583 7.2e-07 59.3 143 32.2
AL5G45370 Arabidopsis lyrata HOM05D012658 ORTHO05D010583 1.2e-06 58.5 143 29.4


User provided reference genes

Program Settings