Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g031220 Solanum pennellii HOM05D004658 ORTHO05D005927 0.0e+00 1616.3 794 100.0
Solyc01g079450.3 Solanum lycopersicum HOM05D004658 ORTHO05D005927 0.0e+00 1534.6 760 98.8
Peaxi162Scf00691g00219 Petunia axillaris HOM05D004658 ORTHO05D005927 0.0e+00 1340.1 753 88.3
Thecc.01G313700 Theobroma cacao HOM05D004658 ORTHO05D005927 0.0e+00 1211.4 760 76.7
Actinidia17899 Actinidia chinensis HOM05D004658 ORTHO05D005927 0.0e+00 1208.7 769 77.2
GSVIVG01028121001 Vitis vinifera HOM05D004658 ORTHO05D005927 0.0e+00 1199.9 689 82.9
CiPaw.07G117600 Carya illinoinensis HOM05D004658 ORTHO05D005927 0.0e+00 1194.5 760 77.8
CSS0014890 Camellia sinensis var. sinensis HOM05D004658 ORTHO05D005927 0.0e+00 1187.9 759 76.5
Gorai.008G139300 Gossypium raimondii HOM05D004658 ORTHO05D005927 0.0e+00 1185.2 760 75.9
Gohir.D12G128500 Gossypium hirsutum HOM05D004658 ORTHO05D005927 0.0e+00 1184.5 757 76.2
Prupe.8G266800 Prunus persica HOM05D004658 ORTHO05D005927 0.0e+00 1183.7 754 76.0
Nn3g21693 Nelumbo nucifera HOM05D004658 ORTHO05D005927 0.0e+00 1182.9 690 81.0
Aqoxy2G02766 Aquilegia oxysepala HOM05D004658 ORTHO05D005927 0.0e+00 1179.1 765 74.5
Cc01_g21440 Coffea canephora HOM05D004658 ORTHO05D005927 0.0e+00 1178.3 699 81.5
CANSAT11G0445 Cannabis sativa HOM05D004658 ORTHO05D005927 0.0e+00 1177.9 756 75.1
RcHm_v2.0_Chr7g0241431 Rosa chinensis HOM05D004658 ORTHO05D005927 0.0e+00 1175.2 757 76.1
MBI18_g17316_MAGBIO Magnolia biondii HOM05D004658 ORTHO05D005927 0.0e+00 1174.5 758 76.4
TAR362G0927 Trochodendron aralioides HOM05D004658 ORTHO05D005927 0.0e+00 1173.7 693 80.8
Dinv10101 Davidia involucrata HOM05D004658 ORTHO05D005927 0.0e+00 1172.9 689 81.6
Lj2C1205T10 Lonicera japonica HOM05D004658 ORTHO05D005927 0.0e+00 1168.7 711 78.6
Manes.05G003600 Manihot esculenta HOM05D004658 ORTHO05D005927 0.0e+00 1167.9 754 75.7
FvH4_5g39170 Fragaria vesca HOM05D004658 ORTHO05D005927 0.0e+00 1167.5 755 75.6
Cfa005797 Carpinus fangiana HOM05D004658 ORTHO05D005927 0.0e+00 1166.8 755 75.9
Duzib133G0239 Durio zibethinus HOM05D004658 ORTHO05D005927 0.0e+00 1164.8 767 74.4
Ca_09212_v3 Cicer arietinum L. HOM05D004658 ORTHO05D005927 0.0e+00 1164.4 757 74.6
PSO210G5154 Papaver somniferum HOM05D004658 ORTHO05D005927 0.0e+00 1164.1 758 74.8
vmacro02405 Vaccinium macrocarpon HOM05D004658 ORTHO05D005927 0.0e+00 1164.1 812 71.9
MD03G1294700 Malus domestica HOM05D004658 ORTHO05D005927 0.0e+00 1162.5 755 74.4
FAN04G3181 Fragaria x ananassa HOM05D004658 ORTHO05D005927 0.0e+00 1159.8 783 73.7
Potri.014G120600 Populus trichocarpa HOM05D004658 ORTHO05D005927 0.0e+00 1157.9 754 75.5
Sc17g0000440 Simmondsia chinensis HOM05D004658 ORTHO05D005927 0.0e+00 1157.1 755 73.6
TWI18G0165 Tripterygium wilfordii HOM05D004658 ORTHO05D005927 0.0e+00 1155.2 761 74.9
Cpa.g.sc18.45 Carica papaya HOM05D004658 ORTHO05D005927 0.0e+00 1154.0 762 74.4
QL12p019917 Quercus lobata HOM05D004658 ORTHO05D005927 0.0e+00 1149.8 803 70.9
PSO761G0108 Papaver somniferum HOM05D004658 ORTHO05D005927 0.0e+00 1148.3 756 74.5
CsaV3_7G029970 Cucumis sativus L. HOM05D004658 ORTHO05D005927 0.0e+00 1147.9 771 73.2
COL.COLO4_23230 Corchorus olitorius HOM05D004658 ORTHO05D005927 0.0e+00 1147.1 689 79.0
TAR633G2306 Trochodendron aralioides HOM05D004658 ORTHO05D005927 0.0e+00 1146.7 689 79.8
MSTRG.18101 Avicennia marina HOM05D004658 ORTHO05D005927 0.0e+00 1146.3 757 73.7
Haze_05044 Corylus avellana HOM05D004658 ORTHO05D005927 0.0e+00 1146.3 735 76.7
MELO3C015923.2 Cucumis melo HOM05D004658 ORTHO05D005927 0.0e+00 1146.3 746 74.5
Eucgr.H01015 Eucalyptus grandis HOM05D004658 ORTHO05D005927 0.0e+00 1146.3 761 73.2
FAN08G2138 Fragaria x ananassa HOM05D004658 ORTHO05D005927 0.0e+00 1146.3 754 75.6
Potri.002G196000 Populus trichocarpa HOM05D004658 ORTHO05D005927 0.0e+00 1146.0 754 74.7
Rhsim13G0005000 Rhododendron simsii HOM05D004658 ORTHO05D005927 0.0e+00 1142.9 846 68.4
HanXRQChr04g0106121 Helianthus annuus HOM05D004658 ORTHO05D005927 0.0e+00 1140.9 758 74.0
Lj1g0019327 Lotus japonicus HOM05D004658 ORTHO05D005927 0.0e+00 1140.6 756 73.1
Lj2A1206G24 Lonicera japonica HOM05D004658 ORTHO05D005927 0.0e+00 1137.9 767 73.7
Medtr7g109530 Medicago truncatula HOM05D004658 ORTHO05D005927 0.0e+00 1137.9 754 72.8
TPR.G4133 Trifolium pratense HOM05D004658 ORTHO05D005927 0.0e+00 1137.9 677 78.7
arahy.Tifrunner.gnm1.ann1.T5GBA6 Arachis hypogaea HOM05D004658 ORTHO05D005927 0.0e+00 1136.3 758 73.2
arahy.Tifrunner.gnm1.ann1.04PXL7 Arachis hypogaea HOM05D004658 ORTHO05D005927 0.0e+00 1135.9 758 73.2
Migut.D00082 Erythranthe guttata HOM05D004658 ORTHO05D005927 0.0e+00 1135.2 755 73.6
Psat3g019800 Pisum sativum HOM05D004658 ORTHO05D005927 0.0e+00 1134.8 757 72.9
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 0.0e+00 1132.5 758 74.3
FAN18G2042 Fragaria x ananassa HOM05D004658 ORTHO05D005927 0.0e+00 1130.9 691 78.6
Lsat_1_v5_gn_8_166941 Lactuca sativa HOM05D004658 ORTHO05D005927 0.0e+00 1130.9 762 73.2
Glyma.03G219500 Glycine max HOM05D004658 ORTHO05D005927 0.0e+00 1128.6 755 72.8
Lalb_Chr04g0259961 Lupinus albus HOM05D004658 ORTHO05D005927 0.0e+00 1127.5 757 71.7
Phvul.001G213000 Phaseolus vulgaris HOM05D004658 ORTHO05D005927 0.0e+00 1127.5 753 72.1
Hund09631 Selenicereus undatus HOM05D004658 ORTHO05D005927 0.0e+00 1126.7 765 72.0
Carub.0004s3011 Capsella rubella HOM05D004658 ORTHO05D005927 0.0e+00 1124.0 754 73.5
C04p00470 Brassica napus HOM05D004658 ORTHO05D005927 0.0e+00 1122.8 712 75.4
C04p72760 Brassica napus HOM05D004658 ORTHO05D005927 0.0e+00 1122.1 754 73.9
VMungo1383G2746 Vigna mungo HOM05D004658 ORTHO05D005927 0.0e+00 1121.7 754 72.4
BcaC02g06972 Brassica carinata HOM05D004658 ORTHO05D005927 0.0e+00 1120.1 754 73.6
Atru.chr5.997 Acer truncatum HOM05D004658 ORTHO05D005927 0.0e+00 1119.8 731 74.1
Sed0011993 Sechium edule HOM05D004658 ORTHO05D005927 0.0e+00 1119.4 745 73.3
CARHR142780 Cardamine hirsuta HOM05D004658 ORTHO05D005927 0.0e+00 1119.0 770 73.0
DCAR_018298 Daucus carota HOM05D004658 ORTHO05D005927 0.0e+00 1118.6 676 78.3
Sp4g29330 Schrenkiella parvula HOM05D004658 ORTHO05D005927 0.0e+00 1118.2 703 76.5
Ah.02g112260 Amaranthus hybridus HOM05D004658 ORTHO05D005927 0.0e+00 1116.7 761 72.5
HanXRQChr06g0168141 Helianthus annuus HOM05D004658 ORTHO05D005927 0.0e+00 1116.3 746 72.5
AT2G47390 Arabidopsis thaliana HOM05D004658 ORTHO05D005927 0.0e+00 1115.9 763 72.5
BcaC02g12575 Brassica carinata HOM05D004658 ORTHO05D005927 0.0e+00 1112.8 714 74.9
Nitab4.5_0003540g0030 Nicotiana tabacum HOM05D004658 ORTHO05D005927 0.0e+00 1112.4 766 75.3
Sed0028068 Sechium edule HOM05D004658 ORTHO05D005927 0.0e+00 1111.3 758 71.2
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 0.0e+00 1110.9 688 76.5
AUR62011802 Chenopodium quinoa HOM05D004658 ORTHO05D005927 0.0e+00 1110.5 767 72.6
ClCG09G005080 Citrullus lanatus HOM05D004658 ORTHO05D005927 0.0e+00 1110.1 749 73.3
THA.LOC104817457 Tarenaya hassleriana HOM05D004658 ORTHO05D005927 0.0e+00 1108.6 755 72.2
BraA05t19050Z Brassica rapa HOM05D004658 ORTHO05D005927 0.0e+00 1106.7 657 79.9
Sabra14G0089400 Salix brachista HOM05D004658 ORTHO05D005927 0.0e+00 1106.7 732 74.2
A05p00520 Brassica napus HOM05D004658 ORTHO05D005927 0.0e+00 1104.4 650 80.0
Aa31LG1G28690 Aethionema arabicum HOM05D004658 ORTHO05D005927 0.0e+00 1102.8 758 71.9
Glyma.19G216400 Glycine max HOM05D004658 ORTHO05D005927 0.0e+00 1101.3 755 72.1
Os03g0307100 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 0.0e+00 1100.9 658 78.3
BcaB02g08775 Brassica carinata HOM05D004658 ORTHO05D005927 0.0e+00 1100.5 746 72.7
Thhalv10001294m.g Eutrema salsugineum HOM05D004658 ORTHO05D005927 0.0e+00 1100.5 767 71.3
ATR0796G129 Amborella trichopoda HOM05D004658 ORTHO05D005927 0.0e+00 1099.3 691 76.3
Lalb_Chr15g0078141 Lupinus albus HOM05D004658 ORTHO05D005927 0.0e+00 1094.0 667 76.8
SalBow3G1126 Salvia bowleyana HOM05D004658 ORTHO05D005927 0.0e+00 1091.6 722 72.0
Zm00001eb014640 Zea mays HOM05D004658 ORTHO05D005927 0.0e+00 1090.9 658 76.7
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 0.0e+00 1086.2 679 75.1
CDE02G1789 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 0.0e+00 1083.9 687 75.3
Duzib138G1936 Durio zibethinus HOM05D004658 ORTHO05D005927 0.0e+00 1081.6 757 71.3
CDE08G1239 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 3.8e-311 1071.2 632 78.8
SGA_v2.0_scaffold334G49068 Striga asiatica HOM05D004658 ORTHO05D005927 1.4e-310 1069.3 669 74.6
Oeu008475.1 Olea europaea HOM05D004658 ORTHO05D005927 3.6e-298 1028.1 770 67.1
RcHm_v2.0_Chr7g0241201 Rosa chinensis HOM05D004658 ORTHO05D005927 4.4e-296 1021.1 576 82.8
Gohir.A12G124600 Gossypium hirsutum HOM05D004658 ORTHO05D005927 7.5e-296 1020.4 576 81.4
HPP92_008950 Vanilla planifolia HOM05D004658 ORTHO05D005927 4.1e-294 1014.6 753 66.4
TPR.G4093 Trifolium pratense HOM05D004658 ORTHO05D005927 8.1e-290 1000.3 600 76.2
Cfa005796 Carpinus fangiana HOM05D004658 ORTHO05D005927 3.1e-289 998.4 680 72.1
Ciclev10018865m.g Citrus clementina HOM05D004658 ORTHO05D005927 1.7e-279 966.1 648 69.8
Mapoly0032s0164 Marchantia polymorpha HOM05D004658 ORTHO05D005927 2.4e-278 962.2 715 65.0
SHI28963 Sapria himalayana HOM05D004658 ORTHO05D005927 7.8e-277 957.2 667 67.9
Pp3c6_17840 Physcomitrium patens HOM05D004658 ORTHO05D005927 6.0e-269 931.0 645 66.4
Ciclev10000356m.g Citrus clementina HOM05D004658 ORTHO05D005927 1.1e-267 926.8 641 68.8
ECA232G0051 Erigeron canadensis HOM05D004658 ORTHO05D005927 4.8e-266 921.4 688 65.4
Pp3c25_7720 Physcomitrium patens HOM05D004658 ORTHO05D005927 2.1e-261 906.0 657 64.8
Haze_05045 Corylus avellana HOM05D004658 ORTHO05D005927 9.9e-256 887.1 625 70.1
Nitab4.5_0008277g0040 Nicotiana tabacum HOM05D004658 ORTHO05D005927 5.5e-254 881.3 481 90.2
AagrBONN_evm.TU.Sc2ySwM_228.2732 Anthoceros agrestis HOM05D004658 ORTHO05D005927 7.1e-254 880.9 691 61.1
SMO365G0028 Selaginella moellendorffii HOM05D004658 ORTHO05D005927 1.8e-252 876.3 643 63.6
BolC4t28757H Brassica oleracea HOM05D004658 ORTHO05D005927 1.7e-247 859.8 609 70.8
Haze_05046 Corylus avellana HOM05D004658 ORTHO05D005927 9.0e-241 837.4 682 62.6
Pp3c23_15570 Physcomitrium patens HOM05D004658 ORTHO05D005927 9.1e-233 810.8 668 58.2
Haze_04782 Corylus avellana HOM05D004658 ORTHO05D005927 9.7e-211 737.6 638 59.7
Dinv33118 Davidia involucrata HOM05D004658 ORTHO05D005927 7.7e-200 701.4 376 86.2
FAN13G1327 Fragaria x ananassa HOM05D004658 ORTHO05D005927 2.9e-178 629.8 464 69.2
MCO09G418 Micromonas commoda HOM05D004658 ORTHO05D005927 1.5e-171 607.4 673 45.9
Cre07.g313122 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 3.5e-168 596.3 739 42.6
MD00G1179100 Malus domestica HOM05D004658 ORTHO05D005927 2.8e-165 586.6 444 65.1
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 5.2e-164 582.4 676 47.3
MD00G1179200 Malus domestica HOM05D004658 ORTHO05D005927 1.7e-159 567.4 322 82.9
CBR_g25724 Chara braunii HOM05D004658 ORTHO05D000184 1.7e-114 417.9 363 54.8
Mapoly0049s0016 Marchantia polymorpha HOM05D004658 ORTHO05D005927 1.5e-110 404.8 274 69.3
Actinidia21401 Actinidia chinensis HOM05D004658 ORTHO05D005927 5.7e-102 376.3 208 81.7
RcHm_v2.0_Chr5g0055721 Rosa chinensis HOM05D004658 ORTHO05D005927 1.6e-96 358.2 250 69.2
ECA232G2110 Erigeron canadensis HOM05D004658 ORTHO05D005927 4.4e-94 350.1 335 56.7
CBR_g25720 Chara braunii HOM05D005350 ORTHO05D008838 6.1e-88 329.7 234 67.1
Mapoly1060s0001 Marchantia polymorpha HOM05D004658 ORTHO05D005927 3.6e-80 303.9 209 67.9
Mapoly0893s0002 Marchantia polymorpha HOM05D004658 ORTHO05D005927 1.5e-73 282.0 198 67.2
Dinv33117 Davidia involucrata HOM05D004658 ORTHO05D005927 9.5e-73 279.3 227 63.9
Lj1C17G9 Lonicera japonica HOM05D004658 ORTHO05D005927 3.2e-68 264.2 269 54.6
Nn6g32423 Nelumbo nucifera HOM05D004658 ORTHO05D005927 1.4e-52 212.2 113 85.8
SMO200G0105 Selaginella moellendorffii HOM05D004658 ORTHO05D000832 1.8e-47 195.3 305 38.7
RcHm_v2.0_Chr5g0055731 Rosa chinensis HOM05D004658 ORTHO05D005927 9.9e-38 162.9 99 77.8
Os07g0689400 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 1.2e-35 156.0 128 57.8
SEGI_04992 Sequoiadendron giganteum HOM05D004658 ORTHO05D005927 2.3e-26 125.2 126 50.8
Nn3g19817 Nelumbo nucifera HOM05D004658 ORTHO05D005927 5.3e-23 114.0 61 86.9
Mapoly4207s0001 Marchantia polymorpha HOM05D004658 ORTHO05D253917 3.2e-12 78.2 74 52.7
Actinidia21402 Actinidia chinensis HOM05D004658 ORTHO05D054698 4.2e-12 77.8 151 33.8
Lsat_1_v5_gn_8_1000 Lactuca sativa HOM05D004658 ORTHO05D229944 2.6e-06 58.5 42 69.0


User provided reference genes

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