Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.4e-219 764.2 361 100.0
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 3.5e-216 754.6 361 98.3
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.8e-212 742.3 361 96.4
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 3.9e-199 698.0 361 90.3
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 3.7e-157 558.5 358 70.9
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 7.7e-155 550.8 344 71.8
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 6.1e-152 541.2 369 65.9
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.0e-150 536.2 352 67.9
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 3.3e-150 535.4 350 69.4
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 5.7e-150 534.6 357 67.5
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 4.8e-149 531.6 359 68.2
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.3e-149 531.2 360 67.5
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 8.2e-149 530.8 355 67.3
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 8.2e-149 530.8 357 66.4
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.1e-148 530.4 360 67.8
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.4e-148 529.3 360 67.5
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 3.1e-148 528.9 360 66.9
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 5.9e-147 524.6 351 66.7
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.7e-147 524.2 359 66.6
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.7e-147 524.2 359 66.6
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.0e-146 521.5 343 68.2
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 5.0e-146 521.5 343 68.8
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 8.5e-146 520.8 343 67.6
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.5e-145 520.0 359 64.6
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 1.9e-145 519.6 366 65.0
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 4.2e-145 518.5 358 67.0
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 4.2e-145 518.5 356 66.6
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 5.5e-145 518.1 357 67.5
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 7.2e-145 517.7 343 66.8
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 7.2e-145 517.7 353 65.7
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 9.4e-145 517.3 342 68.7
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 6.1e-144 514.6 355 66.5
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 8.0e-144 514.2 347 66.0
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 1.4e-143 513.5 348 67.2
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 2.3e-143 512.7 360 64.7
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 5.2e-143 511.5 360 63.9
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.5e-142 510.0 355 64.8
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 2.0e-142 509.6 362 65.5
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 2.0e-142 509.6 354 64.4
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 2.6e-142 509.2 342 67.0
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 5.7e-142 508.1 358 62.8
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 9.7e-142 507.3 338 67.8
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.8e-141 505.8 360 64.2
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 2.8e-141 505.8 358 64.0
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 3.7e-141 505.4 363 64.5
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 4.8e-141 505.0 368 63.3
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 6.3e-141 504.6 344 67.4
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 6.3e-141 504.6 358 63.1
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 1.1e-140 503.8 350 64.3
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.4e-140 503.4 358 62.8
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 1.4e-140 503.4 358 63.1
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 5.3e-140 501.5 361 63.2
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 9.1e-140 500.7 358 62.6
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 9.1e-140 500.7 361 62.6
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 2.0e-139 499.6 351 65.0
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 2.0e-139 499.6 357 64.7
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-138 496.5 355 63.7
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.2e-138 496.1 347 65.4
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 3.8e-138 495.4 342 66.1
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.1e-137 493.8 363 61.7
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.1e-137 493.8 343 67.3
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 1.9e-137 493.0 360 63.1
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 2.5e-137 492.7 319 70.2
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 7.2e-137 491.1 340 66.8
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 1.2e-136 490.3 351 63.2
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 2.7e-136 489.2 319 69.9
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 4.7e-136 488.4 404 58.2
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 4.7e-136 488.4 339 63.1
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.8e-135 486.5 318 69.5
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.3e-135 486.1 351 60.7
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.2e-134 483.8 354 60.5
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.3e-133 480.3 358 61.2
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.3e-133 480.3 351 61.8
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.7e-133 479.9 351 62.1
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.7e-133 479.9 361 59.3
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 2.2e-133 479.6 355 60.3
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.8e-133 479.2 351 61.8
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.8e-133 479.2 351 61.8
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 2.8e-133 479.2 354 63.3
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 2.8e-133 479.2 351 61.8
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 3.7e-133 478.8 354 61.3
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 3.7e-133 478.8 354 61.3
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 3.7e-133 478.8 349 64.2
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 8.3e-133 477.6 320 68.4
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.1e-132 477.2 351 60.7
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 1.4e-132 476.9 354 59.6
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.4e-132 476.1 355 59.7
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 4.1e-132 475.3 352 61.1
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 5.4e-132 474.9 360 60.3
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 5.4e-132 474.9 342 61.7
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 7.0e-132 474.6 351 60.7
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 7.0e-132 474.6 352 59.9
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 1.6e-131 473.4 451 49.2
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 2.0e-131 473.0 336 62.5
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.7e-130 469.9 446 50.4
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 5.0e-130 468.4 289 70.2
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.2e-129 465.3 341 59.8
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 5.5e-129 464.9 352 60.5
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 9.4e-129 464.2 348 60.9
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 2.1e-128 463.0 336 62.8
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 3.0e-127 459.1 354 60.7
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 9.2e-124 447.6 350 62.0
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.6e-123 446.8 350 61.1
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 6.6e-122 441.4 230 88.7
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.9e-121 439.9 353 57.2
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.2e-120 437.2 332 67.5
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 2.8e-120 436.0 368 58.7
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 3.0e-119 432.6 354 59.3
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 8.9e-119 431.0 314 63.7
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 4.9e-117 425.2 275 70.2
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.1e-116 424.1 355 56.6
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-116 424.1 275 69.8
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 9.2e-116 421.0 275 69.5
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 3.1e-111 406.0 341 56.0
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 4.1e-108 395.6 346 54.0
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 6.6e-106 388.3 258 67.4
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 4.7e-104 382.1 267 65.2
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 7.5e-102 374.8 261 64.0
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.9e-100 370.2 322 58.7
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 1.6e-91 340.5 281 53.0
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.0e-90 337.8 223 67.3
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 8.1e-88 328.2 360 43.9
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.4e-87 327.4 249 61.4
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 4.4e-86 322.4 360 43.9
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.9e-84 317.0 324 47.8
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 2.7e-83 313.2 331 45.6
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.7e-82 310.5 271 55.0
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.2e-78 297.7 204 64.7
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 7.1e-76 288.5 221 58.4
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 6.0e-75 285.4 194 66.5
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.8e-74 283.9 314 45.2
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 9.6e-73 278.1 244 60.7
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 6.2e-72 275.4 217 58.5
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.3e-66 256.9 195 62.1
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.9e-66 256.1 200 59.5
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.3e-64 251.1 168 66.1
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 4.1e-55 219.5 143 70.6
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 9.0e-55 218.4 160 60.6
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.5e-54 217.6 155 63.2
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 4.8e-40 169.5 228 42.5
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 9.7e-33 145.2 99 65.7
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 3.2e-28 130.2 103 55.3
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.5e-25 121.3 97 54.6
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.8e-23 114.4 107 52.3
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.2e-22 111.7 102 51.0
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.3e-08 65.1 143 25.2
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 2.7e-06 57.4 72 44.4


User provided reference genes

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