Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 0.0e+00 1283.1 691 100.0
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 0.0e+00 1148.3 691 91.5
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 0.0e+00 1115.5 695 89.4
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 1.8e-237 826.2 715 68.8
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 1.8e-229 799.7 715 67.6
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 3.6e-145 519.6 691 50.2
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 7.7e-95 352.4 714 38.2
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 2.1e-92 344.4 683 36.9
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 1.6e-84 318.2 725 36.0
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 2.1e-76 291.2 709 36.4
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 3.6e-76 290.4 666 36.0
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 2.3e-75 287.7 727 33.8
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 2.0e-74 284.6 685 34.9
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 3.0e-67 260.8 675 32.4
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 8.8e-67 259.2 709 32.4
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 2.8e-65 254.2 702 33.8
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 4.8e-65 253.4 673 33.7
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 1.8e-64 251.5 706 33.9
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 1.8e-64 251.5 695 33.8
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 9.1e-64 249.2 700 32.7
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 7.7e-63 246.1 694 33.1
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 1.0e-62 245.7 679 32.5
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 3.3e-61 240.7 678 33.9
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 4.7e-60 236.9 700 32.3
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 8.0e-60 236.1 703 33.4
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 1.4e-59 235.3 655 35.0
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 2.0e-58 231.5 694 32.6
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 4.4e-58 230.3 693 31.9
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 7.5e-58 229.6 665 32.8
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 2.8e-57 227.6 682 33.1
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 2.8e-57 227.6 680 31.8
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 1.1e-56 225.7 699 33.0
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.1e-56 225.7 699 33.0
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 1.4e-56 225.3 707 32.0
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 3.1e-56 224.2 702 31.8
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 7.0e-56 223.0 680 34.0
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 2.7e-55 221.1 699 32.8
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 2.7e-55 221.1 691 32.7
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 2.3e-54 218.0 698 32.7
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 3.9e-54 217.2 692 32.2
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 3.9e-54 217.2 700 31.6
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 6.6e-54 216.5 685 31.7
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 1.1e-53 215.7 676 31.5
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 1.9e-53 214.9 696 31.3
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 2.1e-52 211.5 680 30.1
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 6.1e-52 209.9 697 31.4
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 6.1e-52 209.9 697 31.3
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 4.0e-51 207.2 683 30.9
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 1.6e-47 195.3 451 36.6
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 2.0e-47 194.9 658 31.5
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 2.0e-47 194.9 681 31.0
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 2.3e-46 191.4 230 50.9
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 1.1e-45 189.1 700 31.0
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 1.5e-45 188.7 697 31.9
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 1.9e-45 188.3 694 32.0
unitig_37.g12398 Utricularia gibba HOM05D007342 ORTHO05D009252 1.9e-45 188.3 656 31.9
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 7.3e-45 186.4 642 32.6
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 3.6e-44 184.1 706 30.3
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 8.9e-43 179.5 671 30.7
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 2.0e-42 178.3 644 31.5
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 2.6e-42 177.9 687 32.0
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 3.4e-42 177.6 684 29.4
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 7.5e-42 176.4 280 41.4
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 3.7e-41 174.1 691 30.0
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 6.4e-41 173.3 661 30.4
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 9.2e-40 169.5 695 27.2
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 3.9e-38 164.1 698 29.8
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 8.6e-38 162.9 527 33.8
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 9.5e-37 159.5 669 29.0
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 1.2e-36 159.1 620 30.3
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 2.8e-36 157.9 696 30.0
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 3.1e-35 154.5 650 27.5
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 6.8e-35 153.3 696 27.6
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 8.9e-35 152.9 689 26.6
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 1.3e-33 149.1 616 28.4
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 1.7e-33 148.7 692 27.5
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 3.7e-33 147.5 538 28.4
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 8.3e-33 146.4 690 27.1
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 5.4e-32 143.7 537 28.5
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 9.2e-32 142.9 669 25.3
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 6.6e-30 136.7 694 27.4
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 6.6e-30 136.7 694 27.4
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 6.6e-30 136.7 694 27.4
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 3.3e-29 134.4 746 27.9
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 9.6e-29 132.9 528 28.2
Psat4g027440 Pisum sativum HOM05D007342 ORTHO05D009252 2.8e-28 131.3 485 30.1
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 3.6e-28 131.0 694 27.1
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 3.6e-28 131.0 480 31.9
BcaC06g32967 Brassica carinata HOM05D007342 ORTHO05D009252 8.9e-27 126.3 168 42.9
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 8.9e-27 126.3 127 51.2
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 3.8e-25 120.9 508 27.8
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 1.1e-24 119.4 694 27.7
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 3.2e-24 117.9 205 34.1
Lalb_Chr07g0177731 Lupinus albus HOM05D007342 ORTHO05D009252 7.1e-24 116.7 202 38.1
DCAR_023500 Daucus carota HOM05D007342 ORTHO05D009252 9.3e-24 116.3 319 33.9
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 3.9e-22 110.9 318 36.2
THA.LOC104810667 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.1e-19 102.8 111 50.5
HPP92_016942 Vanilla planifolia HOM05D007342 ORTHO05D009252 1.4e-19 102.4 211 34.1
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 1.8e-19 102.1 406 28.8
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 3.1e-19 101.3 778 24.4
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 4.0e-19 100.9 419 30.5
THA.LOC104820435 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 4.0e-19 100.9 110 49.1
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 5.8e-18 97.1 474 27.6
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 3.5e-15 87.8 131 35.9
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 1.0e-14 86.3 131 35.1
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 6.6e-14 83.6 131 33.6
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 1.9e-13 82.0 131 32.8
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 2.5e-13 81.6 134 32.1
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 3.3e-13 81.3 137 31.4
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 3.3e-13 81.3 137 31.4
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 3.3e-13 81.3 137 31.4
unitig_899.g14797 Utricularia gibba HOM05D005676 ORTHO05D007375 3.3e-13 81.3 134 31.3
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 5.6e-13 80.5 131 34.4
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 7.3e-13 80.1 256 26.6
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 7.3e-13 80.1 120 34.2
Lalb_Chr17g0342721 Lupinus albus HOM05D005676 ORTHO05D007375 7.3e-13 80.1 131 32.1
Sopen01g039730 Solanum pennellii HOM05D005676 ORTHO05D007375 9.6e-13 79.7 137 30.7
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 1.3e-12 79.3 137 29.9
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 1.3e-12 79.3 131 32.1
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 1.3e-12 79.3 112 34.8
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 2.1e-12 78.6 131 32.8
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 2.1e-12 78.6 107 38.3
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 3.6e-12 77.8 262 27.1
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 6.2e-12 77.0 190 32.6
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 1.8e-11 75.5 268 25.7
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 1.8e-11 75.5 171 29.2
Migut.B01876 Erythranthe guttata HOM05D005676 ORTHO05D007375 3.1e-11 74.7 121 33.1
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 4.0e-11 74.3 292 26.4
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 9.0e-11 73.2 178 29.8
CBR_g23443 Chara braunii HOM05D005676 ORTHO05D007375 2.0e-10 72.0 127 31.5
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 3.4e-10 71.2 234 27.8
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 3.4e-10 71.2 260 24.6
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 4.5e-10 70.9 254 25.6
MD07G1150100 Malus domestica HOM05D005676 ORTHO05D007375 4.5e-10 70.9 112 32.1
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 7.6e-10 70.1 216 26.4
Atru.chr5.673 Acer truncatum HOM05D005676 ORTHO05D007375 9.9e-10 69.7 159 28.3
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 9.9e-10 69.7 264 25.0
SalBow3G4648 Salvia bowleyana HOM05D005676 ORTHO05D007375 9.9e-10 69.7 240 27.5
Sed0007378 Sechium edule HOM05D005676 ORTHO05D007375 9.9e-10 69.7 186 29.6
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 1.7e-09 68.9 292 25.3
Lj3g0008614 Lotus japonicus HOM05D005676 ORTHO05D007375 1.7e-09 68.9 264 25.0
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 1.7e-09 68.9 263 27.4
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 2.2e-09 68.6 281 26.7
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 3.8e-09 67.8 272 25.7
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 3.8e-09 67.8 235 27.2
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 4.9e-09 67.4 279 25.1
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 4.9e-09 67.4 278 27.7
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 4.9e-09 67.4 246 26.8
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 4.9e-09 67.4 246 26.8
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 4.9e-09 67.4 276 23.2
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 6.4e-09 67.0 271 26.2
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 6.4e-09 67.0 199 27.1
EL10Ac2g03667 Beta vulgaris HOM05D007342 ORTHO05D009252 8.4e-09 66.6 488 26.4
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 8.4e-09 66.6 240 26.2
Peaxi162Scf00786g00018 Petunia axillaris HOM05D005676 ORTHO05D007375 8.4e-09 66.6 143 26.6
GSVIVG01027152001 Vitis vinifera HOM05D005676 ORTHO05D007375 1.1e-08 66.2 261 24.9
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 1.4e-08 65.9 277 25.6
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 1.4e-08 65.9 248 25.8
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 1.4e-08 65.9 280 23.2
Lj9A598G65 Lonicera japonica HOM05D005676 ORTHO05D007375 1.4e-08 65.9 267 24.7
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 1.4e-08 65.9 281 25.3
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 1.9e-08 65.5 263 26.6
VMungo0331G0849 Vigna mungo HOM05D005676 ORTHO05D007375 1.9e-08 65.5 230 26.5
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.2e-08 64.7 247 27.1
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.2e-08 64.7 247 27.1
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 3.2e-08 64.7 263 25.5
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 4.2e-08 64.3 271 23.6
TAR633G1503 Trochodendron aralioides HOM05D007342 ORTHO05D009252 4.2e-08 64.3 209 32.1
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 5.4e-08 63.9 239 25.1
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 7.1e-08 63.5 267 28.1
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 7.1e-08 63.5 246 26.0
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 7.1e-08 63.5 235 25.5
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 9.3e-08 63.2 261 25.3
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 1.2e-07 62.8 261 23.8
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 1.6e-07 62.4 272 25.7
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 2.1e-07 62.0 235 25.1
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 2.7e-07 61.6 240 26.7
Ah.11g044170 Amaranthus hybridus HOM05D007342 ORTHO05D009252 3.5e-07 61.2 249 31.7
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 4.6e-07 60.8 275 24.4
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 1.8e-06 58.9 233 24.9
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 1.8e-06 58.9 245 25.3
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 3.0e-06 58.2 267 25.8
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 3.0e-06 58.2 273 26.7
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 3.0e-06 58.2 273 26.7
Prupe.2G189000 Prunus persica HOM05D005676 ORTHO05D007375 5.1e-06 57.4 271 22.9


User provided reference genes

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