Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 0.0e+00 1502.6 783 100.0
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 0.0e+00 1472.2 783 98.1
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 0.0e+00 1386.7 793 92.8
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 0.0e+00 1154.0 793 79.6
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 3.1e-278 961.8 829 67.1
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.6e-274 949.5 796 68.3
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 6.8e-257 891.0 851 62.2
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 2.0e-99 367.9 596 42.1
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 8.4e-90 335.9 828 35.5
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 3.5e-80 303.9 827 33.6
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 3.3e-78 297.4 836 32.2
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 4.3e-78 297.0 846 31.8
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.4e-76 292.0 805 33.4
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 1.5e-75 288.5 804 32.1
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 7.6e-75 286.2 837 32.5
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 3.2e-73 280.8 828 32.1
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 1.0e-71 275.8 814 30.3
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.8e-69 267.7 800 31.2
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 4.1e-68 263.8 819 31.0
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 4.1e-68 263.8 893 31.2
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 5.3e-68 263.5 826 30.6
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 9.1e-68 262.7 813 31.5
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.2e-67 262.3 886 30.0
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.2e-67 262.3 822 31.9
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 2.2e-66 258.1 850 30.1
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 1.9e-65 255.0 864 29.4
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 6.1e-64 250.0 827 29.5
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 1.8e-63 248.4 848 29.4
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 1.5e-62 245.4 853 29.9
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 1.5e-62 245.4 834 30.9
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 2.6e-62 244.6 834 30.0
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 7.4e-62 243.0 728 32.3
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 1.7e-61 241.9 828 30.1
PGSC0003DMG400031489 Solanum tuberosum HOM05D005434 ORTHO05D006412 2.8e-61 241.1 158 80.4
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 8.2e-61 239.6 783 30.0
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 1.1e-60 239.2 802 29.9
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 1.1e-60 239.2 826 29.8
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.4e-60 238.8 888 29.8
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.4e-60 238.8 879 30.1
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 1.8e-60 238.4 884 29.3
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 2.4e-60 238.0 814 29.6
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 4.1e-60 237.3 792 30.6
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 5.3e-60 236.9 789 30.8
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 9.1e-60 236.1 818 29.6
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.5e-59 235.3 883 29.9
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 3.4e-59 234.2 819 28.9
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 4.5e-59 233.8 817 29.3
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 4.5e-59 233.8 822 29.3
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 5.9e-59 233.4 766 29.9
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 1.0e-58 232.6 847 28.7
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 6.5e-58 229.9 897 27.9
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 8.5e-58 229.6 884 29.2
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 9.4e-57 226.1 863 28.5
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 1.2e-56 225.7 936 28.0
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 1.6e-56 225.3 835 28.3
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 1.6e-56 225.3 881 28.6
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 1.6e-56 225.3 794 29.6
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 1.0e-55 222.6 812 29.9
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.0e-55 222.6 880 29.4
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 1.0e-55 222.6 805 28.9
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 1.8e-55 221.9 822 29.1
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 2.3e-55 221.5 827 29.4
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 5.2e-55 220.3 810 29.5
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 2.6e-54 218.0 917 27.6
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 6.3e-53 213.4 820 28.3
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 2.4e-52 211.5 618 30.9
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 3.1e-52 211.1 822 28.2
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 7.0e-52 209.9 901 27.7
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 9.1e-52 209.5 819 28.7
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 9.1e-52 209.5 969 28.4
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 9.1e-52 209.5 814 29.9
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 8.5e-50 203.0 781 28.6
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 3.2e-49 201.1 830 28.4
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.7e-48 197.2 855 27.7
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 4.7e-48 197.2 854 28.1
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 8.0e-48 196.4 854 27.6
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 1.4e-47 195.7 823 28.4
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 2.3e-47 194.9 788 28.8
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 3.0e-47 194.5 802 28.2
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 4.0e-47 194.1 871 28.5
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 4.4e-46 190.7 908 26.2
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 5.7e-46 190.3 751 28.2
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 9.7e-46 189.5 170 57.1
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.7e-45 188.7 841 27.2
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 1.1e-44 186.0 762 28.7
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 1.6e-43 182.2 579 32.5
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 3.5e-43 181.0 200 49.0
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 8.5e-42 176.4 765 26.5
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 2.3e-39 168.3 785 27.8
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 2.3e-39 168.3 835 26.5
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 1.5e-38 165.6 792 28.5
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 1.4e-36 159.1 800 26.0
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.9e-35 153.7 923 25.6
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 6.1e-32 143.7 140 52.1
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.8e-31 142.1 835 25.1
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 6.8e-31 140.2 137 48.9
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.5e-30 139.0 167 44.3
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 4.4e-30 137.5 775 25.7
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 9.2e-28 129.8 87 79.3
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 6.6e-26 123.6 375 29.6
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 3.3e-25 121.3 573 26.5
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 4.3e-25 120.9 492 29.9
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 5.6e-25 120.6 107 57.9
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 6.1e-24 117.1 455 29.2
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 1.0e-23 116.3 148 43.2
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 5.2e-23 114.0 557 25.7
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 6.8e-23 113.6 599 28.0
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 2.9e-21 108.2 155 38.1
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 6.4e-21 107.1 539 25.4
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 8.3e-21 106.7 895 24.2
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.4e-20 105.9 99 52.5
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 3.0e-18 98.2 630 27.6
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.9e-17 95.5 586 27.0
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 2.8e-16 91.7 602 26.1
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.3e-13 82.8 639 23.9
PGSC0003DMG400033862 Solanum tuberosum HOM05D005434 ORTHO05D006412 3.7e-13 81.3 43 93.0
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 2.4e-12 78.6 169 40.8
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 3.2e-12 78.2 165 35.2
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 1.6e-11 75.9 193 29.0
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 2.5e-09 68.6 97 44.3
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 7.3e-09 67.0 174 25.9
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 2.1e-08 65.5 85 41.2
unitig_52.g16899 Utricularia gibba HOM05D005434 ORTHO05D006412 6.2e-08 63.9 125 35.2
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 8.9e-07 60.1 108 35.2
HanXRQChr10g0286491 Helianthus annuus HOM05D005434 ORTHO05D006412 1.5e-06 59.3 269 26.8


User provided reference genes

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