Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g030530 Solanum pennellii HOM05D006579 ORTHO05D007783 2.4e-127 459.1 289 100.0
Solyc01g068580.4 Solanum lycopersicum HOM05D006579 ORTHO05D007783 2.7e-126 455.7 289 98.6
CAN.G179.22 Capsicum annuum HOM05D006579 ORTHO05D007783 1.1e-116 423.7 289 93.1
PGSC0003DMG400000840 Solanum tuberosum HOM05D006579 ORTHO05D007783 1.3e-115 420.2 327 84.7
Nitab4.5_0001628g0050 Nicotiana tabacum HOM05D006579 ORTHO05D007783 2.8e-115 419.1 289 83.0
Nitab4.5_0002103g0080 Nicotiana tabacum HOM05D006579 ORTHO05D007783 2.8e-115 419.1 289 85.1
Cc06_g22680 Coffea canephora HOM05D006579 ORTHO05D007783 1.2e-97 360.5 288 68.1
Dinv33186 Davidia involucrata HOM05D006579 ORTHO05D007783 2.0e-97 359.8 288 75.0
Peaxi162Scf00309g00059 Petunia axillaris HOM05D006579 ORTHO05D007783 6.5e-96 354.8 211 89.6
Ciclev10021552m.g Citrus clementina HOM05D006579 ORTHO05D007783 3.2e-95 352.4 254 74.0
Thecc.01G328000 Theobroma cacao HOM05D006579 ORTHO05D007783 5.5e-95 351.7 290 66.9
Potri.014G110200 Populus trichocarpa HOM05D006579 ORTHO05D007783 1.2e-94 350.5 290 67.6
Duzib138G1509 Durio zibethinus HOM05D006579 ORTHO05D007783 2.1e-94 349.7 290 66.6
Manes.14G164500 Manihot esculenta HOM05D006579 ORTHO05D007783 2.1e-94 349.7 289 72.0
Gohir.D11G111000 Gossypium hirsutum HOM05D006579 ORTHO05D007783 2.7e-94 349.4 286 67.5
COL.COLO4_23096 Corchorus olitorius HOM05D006579 ORTHO05D007783 3.5e-94 349.0 289 66.8
Gorai.007G118800 Gossypium raimondii HOM05D006579 ORTHO05D007783 4.6e-94 348.6 286 67.5
Glyma.02G006400 Glycine max HOM05D006579 ORTHO05D007783 7.9e-94 347.8 290 66.6
Oeu038082.1 Olea europaea HOM05D006579 ORTHO05D007783 1.8e-93 346.7 288 67.0
DCAR_018237 Daucus carota HOM05D006579 ORTHO05D007783 2.5e-92 342.8 285 69.8
Gohir.A11G106100 Gossypium hirsutum HOM05D006579 ORTHO05D007783 5.7e-92 341.7 286 67.1
Phvul.007G207700 Phaseolus vulgaris HOM05D006579 ORTHO05D007783 5.7e-92 341.7 290 71.4
HanXRQChr01g0017841 Helianthus annuus HOM05D006579 ORTHO05D007783 6.3e-91 338.2 299 65.6
THA.LOC104825921 Tarenaya hassleriana HOM05D006579 ORTHO05D007783 6.3e-91 338.2 293 65.9
Glyma.10G140000 Glycine max HOM05D006579 ORTHO05D007783 1.8e-90 336.7 257 71.6
Nn8g39570 Nelumbo nucifera HOM05D006579 ORTHO05D007783 2.4e-90 336.3 289 65.4
VMungo0720G0607 Vigna mungo HOM05D006579 ORTHO05D007783 3.1e-90 335.9 257 72.0
ECA248G0873 Erigeron canadensis HOM05D006579 ORTHO05D007783 5.3e-90 335.1 297 65.3
Aqoxy2G02395 Aquilegia oxysepala HOM05D006579 ORTHO05D007783 1.2e-89 334.0 297 69.7
arahy.Tifrunner.gnm1.ann1.3317JQ Arachis hypogaea HOM05D006579 ORTHO05D007783 1.2e-89 334.0 257 72.0
Ca_10226_v3 Cicer arietinum L. HOM05D006579 ORTHO05D007783 1.2e-89 334.0 289 65.1
arahy.Tifrunner.gnm1.ann1.E1WP71 Arachis hypogaea HOM05D006579 ORTHO05D007783 2.6e-89 332.8 257 71.6
Lj5g0006855 Lotus japonicus HOM05D006579 ORTHO05D007783 4.5e-89 332.0 292 65.8
GSVIVG01028219001 Vitis vinifera HOM05D006579 ORTHO05D007783 5.9e-89 331.6 289 67.1
Medtr1g085470 Medicago truncatula HOM05D006579 ORTHO05D007783 7.7e-89 331.3 288 69.1
SalBow3G0048 Salvia bowleyana HOM05D006579 ORTHO05D007783 1.0e-88 330.9 288 67.0
PGR042G1939 Punica granatum HOM05D006579 ORTHO05D007783 1.3e-88 330.5 287 63.1
Atru.chr5.832 Acer truncatum HOM05D006579 ORTHO05D007783 2.2e-88 329.7 250 78.0
CSS0004948 Camellia sinensis var. sinensis HOM05D006579 ORTHO05D007783 2.9e-88 329.3 210 81.4
Aa31LG1G10170 Aethionema arabicum HOM05D006579 ORTHO05D007783 3.8e-88 328.9 289 69.6
Sabra14G0081200 Salix brachista HOM05D006579 ORTHO05D007783 5.0e-88 328.6 321 60.1
TAR362G0572 Trochodendron aralioides HOM05D006579 ORTHO05D007783 5.0e-88 328.6 289 68.5
Carub.0001s0137 Capsella rubella HOM05D006579 ORTHO05D007783 6.5e-88 328.2 294 64.3
TPR.G3075 Trifolium pratense HOM05D006579 ORTHO05D007783 1.4e-87 327.0 290 68.6
ATR0796G267 Amborella trichopoda HOM05D006579 ORTHO05D007783 1.9e-87 326.6 286 65.0
Psat6g157680 Pisum sativum HOM05D006579 ORTHO05D007783 3.2e-87 325.9 288 63.5
CARHR001640 Cardamine hirsuta HOM05D006579 ORTHO05D007783 5.5e-87 325.1 294 64.6
MBI15_g35678_MAGBIO Magnolia biondii HOM05D006579 ORTHO05D007783 5.5e-87 325.1 288 64.6
Lalb_Chr06g0167181 Lupinus albus HOM05D006579 ORTHO05D007783 1.2e-86 323.9 291 68.0
Lalb_Chr21g0309921 Lupinus albus HOM05D006579 ORTHO05D007783 1.2e-86 323.9 290 69.0
QL09p037462 Quercus lobata HOM05D006579 ORTHO05D007783 1.2e-86 323.9 268 66.0
AL1G11660 Arabidopsis lyrata HOM05D006579 ORTHO05D007783 3.6e-86 322.4 294 68.7
Thhalv10008452m.g Eutrema salsugineum HOM05D006579 ORTHO05D007783 4.6e-86 322.0 292 68.8
Cfa004929 Carpinus fangiana HOM05D006579 ORTHO05D007783 6.1e-86 321.6 298 60.7
ClCG01G007260 Citrullus lanatus HOM05D006579 ORTHO05D007783 6.1e-86 321.6 301 68.8
CsaV3_5G018690 Cucumis sativus L. HOM05D006579 ORTHO05D007783 6.1e-86 321.6 301 68.1
AT1G02330 Arabidopsis thaliana HOM05D006579 ORTHO05D007783 7.9e-86 321.2 295 68.8
Sp1g01410 Schrenkiella parvula HOM05D006579 ORTHO05D007783 1.4e-85 320.5 293 68.3
CiPaw.07G127500 Carya illinoinensis HOM05D006579 ORTHO05D007783 3.0e-85 319.3 263 67.7
MD17G1285900 Malus domestica HOM05D006579 ORTHO05D007783 3.9e-85 318.9 309 66.0
BcaC05g24612 Brassica carinata HOM05D006579 ORTHO05D007783 6.7e-85 318.2 292 68.2
C05p01100 Brassica napus HOM05D006579 ORTHO05D007783 6.7e-85 318.2 292 68.2
MELO3C005183.2 Cucumis melo HOM05D006579 ORTHO05D007783 6.7e-85 318.2 301 66.1
Migut.D00005 Erythranthe guttata HOM05D006579 ORTHO05D007783 6.7e-85 318.2 293 66.2
Sed0009510 Sechium edule HOM05D006579 ORTHO05D007783 1.1e-84 317.4 295 68.5
Eucgr.A00989 Eucalyptus grandis HOM05D006579 ORTHO05D007783 1.5e-84 317.0 284 64.1
BolC5t28891H Brassica oleracea HOM05D006579 ORTHO05D007783 2.5e-84 316.2 292 67.8
Cpa.g.sc57.48 Carica papaya HOM05D006579 ORTHO05D007783 2.5e-84 316.2 289 63.0
Lsat_1_v5_gn_1_78561 Lactuca sativa HOM05D006579 ORTHO05D007783 4.3e-84 315.5 285 63.9
Prupe.3G000500 Prunus persica HOM05D006579 ORTHO05D007783 4.3e-84 315.5 304 68.4
BraA10t42384Z Brassica rapa HOM05D006579 ORTHO05D007783 5.7e-84 315.1 292 67.5
PSO210G5405 Papaver somniferum HOM05D006579 ORTHO05D007783 7.4e-84 314.7 255 67.8
PSO761G0510 Papaver somniferum HOM05D006579 ORTHO05D007783 7.4e-84 314.7 257 67.3
Hund07814 Selenicereus undatus HOM05D006579 ORTHO05D007783 1.7e-83 313.5 285 61.8
TWI23G0058 Tripterygium wilfordii HOM05D006579 ORTHO05D007783 1.7e-83 313.5 290 62.1
CANSAT25G2874 Cannabis sativa HOM05D006579 ORTHO05D007783 3.1e-82 309.3 301 60.5
MSTRG.18055 Avicennia marina HOM05D006579 ORTHO05D007783 2.2e-80 303.1 286 65.7
SGA_v2.0_scaffold417G51243 Striga asiatica HOM05D006579 ORTHO05D007783 2.2e-80 303.1 320 58.4
EL10Ac9g20927 Beta vulgaris HOM05D006579 ORTHO05D007783 6.5e-80 301.6 285 60.0
HPP92_026046 Vanilla planifolia HOM05D006579 ORTHO05D007783 4.2e-79 298.9 289 60.2
FvH4_1g26040 Fragaria vesca HOM05D006579 ORTHO05D007783 2.7e-78 296.2 287 59.6
FAN19G0998 Fragaria x ananassa HOM05D006579 ORTHO05D007783 2.7e-78 296.2 287 59.6
RcHm_v2.0_Chr3g0485501 Rosa chinensis HOM05D006579 ORTHO05D007783 1.8e-77 293.5 305 55.7
Sc12g0008270 Simmondsia chinensis HOM05D006579 ORTHO05D007783 3.0e-77 292.7 285 59.3
FAN28G1483 Fragaria x ananassa HOM05D006579 ORTHO05D007783 5.1e-77 292.0 287 58.9
Hma1.2p1_1372F.1_g278650 Hydrangea macrophylla HOM05D006579 ORTHO05D007783 3.7e-75 285.8 180 83.3
FAN23G1885 Fragaria x ananassa HOM05D006579 ORTHO05D007783 8.2e-75 284.6 291 57.7
FAN23G2819 Fragaria x ananassa HOM05D006579 ORTHO05D007783 8.2e-75 284.6 291 57.7
AUR62037602 Chenopodium quinoa HOM05D006579 ORTHO05D007783 7.0e-74 281.6 285 56.5
Actinidia21333 Actinidia chinensis HOM05D006579 ORTHO05D007783 4.5e-73 278.9 269 59.9
FAN26G1368 Fragaria x ananassa HOM05D006579 ORTHO05D007783 4.5e-73 278.9 316 53.8
Pp3c6_17910 Physcomitrium patens HOM05D006579 ORTHO05D007783 3.8e-72 275.8 289 58.8
CSS0018503 Camellia sinensis var. sinensis HOM05D006579 ORTHO05D007783 4.2e-71 272.3 173 82.1
Mapoly0012s0210 Marchantia polymorpha HOM05D006579 ORTHO05D007783 5.5e-71 271.9 295 57.6
Os03g0374100 Oryza sativa ssp. japonica HOM05D006579 ORTHO05D007783 3.9e-69 265.8 289 60.6
AagrBONN_evm.TU.Sc2ySwM_117.1030 Anthoceros agrestis HOM05D006579 ORTHO05D007783 6.3e-67 258.5 261 59.8
Rhsim01G0001200 Rhododendron simsii HOM05D006579 ORTHO05D007783 6.3e-67 258.5 173 78.6
Zm00001eb018120 Zea mays HOM05D006579 ORTHO05D007783 7.0e-66 255.0 289 54.0
Pp3c5_5390 Physcomitrium patens HOM05D006579 ORTHO05D007783 1.5e-63 247.3 258 58.1
unitig_747.g21528 Utricularia gibba HOM05D006579 ORTHO05D007783 3.6e-62 242.7 292 54.8
SHI19775 Sapria himalayana HOM05D006579 ORTHO05D007783 1.7e-59 233.8 294 50.7
Ah.01g015750 Amaranthus hybridus HOM05D006579 ORTHO05D007783 1.8e-58 230.3 410 40.7
vmacro02350 Vaccinium macrocarpon HOM05D006579 ORTHO05D007783 1.1e-50 204.5 133 80.5
CBR_g3462 Chara braunii HOM05D006579 ORTHO05D007783 5.9e-49 198.7 202 54.5
Lju2566A1G36 Lonicera japonica HOM05D006579 ORTHO05D007783 2.8e-46 189.9 158 68.4
HanXRQChr09g0263751 Helianthus annuus HOM05D006579 ORTHO05D007783 7.5e-44 181.8 182 61.5
HPP92_013492 Vanilla planifolia HOM05D006579 ORTHO05D007783 3.9e-40 169.5 181 56.4
SEGI_25815 Sequoiadendron giganteum HOM05D006579 ORTHO05D007783 9.5e-39 164.9 134 68.7
SMO367G0899 Selaginella moellendorffii HOM05D006579 ORTHO05D007783 3.0e-32 143.3 150 58.7
Haze_05169 Corylus avellana HOM05D006579 ORTHO05D007783 1.1e-29 134.8 167 50.9
Cc00_g21250 Coffea canephora HOM05D006579 ORTHO05D007783 5.2e-29 132.5 77 85.7
AUR62039016 Chenopodium quinoa HOM05D006579 ORTHO05D007783 6.4e-27 125.6 153 49.7
SEGI_10424 Sequoiadendron giganteum HOM05D006579 ORTHO05D007783 9.5e-23 111.7 158 50.6
COL.COLO4_00282 Corchorus olitorius HOM05D006579 ORTHO05D007783 3.7e-19 99.8 116 52.6
vmacro02349 Vaccinium macrocarpon HOM05D006579 ORTHO05D007783 2.1e-17 94.0 115 49.6
Rhsim01G0001100 Rhododendron simsii HOM05D006579 ORTHO05D007783 3.5e-17 93.2 115 49.6
MCO04G420 Micromonas commoda HOM05D006579 ORTHO05D007783 8.6e-16 88.6 94 51.1
Lju2566A1T41 Lonicera japonica HOM05D006579 ORTHO05D007783 8.4e-11 72.0 42 83.3
Lju2566A1T42 Lonicera japonica HOM05D006579 ORTHO05D007783 7.3e-07 58.9 117 42.7


User provided reference genes

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