Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 3.5e-223 778.1 426 100.0
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 4.9e-217 757.7 426 96.0
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 8.4e-169 597.4 336 92.0
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 1.6e-151 540.0 414 74.4
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.1e-131 472.6 427 66.7
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 7.5e-117 424.9 388 64.2
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 5.6e-88 328.9 239 74.9
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 1.1e-78 298.1 411 47.7
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.1e-72 278.1 197 75.1
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.6e-71 273.1 438 43.6
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 2.4e-70 270.4 306 52.3
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.4e-67 260.4 297 51.9
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.4e-67 260.4 297 51.9
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 6.0e-66 255.8 288 51.0
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 6.0e-66 255.8 440 43.4
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 6.7e-65 252.3 349 46.1
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 6.2e-63 245.7 374 43.3
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 1.4e-62 244.6 280 51.1
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 9.0e-62 241.9 266 54.1
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 9.0e-62 241.9 416 41.3
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.5e-61 241.1 410 41.5
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 2.6e-61 240.4 297 47.5
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 5.8e-61 239.2 410 41.2
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 7.6e-61 238.8 389 42.4
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 7.6e-61 238.8 414 41.1
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 2.9e-60 236.9 409 40.6
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 2.9e-60 236.9 360 43.9
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 2.9e-60 236.9 291 49.8
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 4.9e-60 236.1 410 40.0
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 8.4e-60 235.3 413 40.4
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.5e-59 233.8 413 40.4
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 2.5e-59 233.8 419 38.2
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 3.2e-59 233.4 411 40.4
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 4.2e-59 233.0 280 51.4
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 7.1e-59 232.3 421 38.0
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 7.1e-59 232.3 414 42.0
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 3.5e-58 229.9 280 49.6
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 6.0e-58 229.2 290 48.3
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 1.8e-57 227.6 430 41.2
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 1.8e-57 227.6 286 49.3
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 2.3e-57 227.3 416 40.4
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 3.0e-57 226.9 416 39.4
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 3.9e-57 226.5 293 49.1
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 3.9e-57 226.5 431 38.1
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 8.7e-57 225.3 293 45.7
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 1.1e-56 224.9 382 42.4
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 1.9e-56 224.2 400 41.2
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 2.5e-56 223.8 442 37.6
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.5e-56 223.8 285 43.9
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 2.5e-56 223.8 275 46.2
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 3.3e-56 223.4 291 45.7
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 5.7e-56 222.6 442 36.9
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 7.4e-56 222.2 434 37.8
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 9.6e-56 221.9 443 38.4
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 4.8e-55 219.5 388 40.5
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 1.4e-54 218.0 422 40.3
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 1.4e-54 218.0 358 41.9
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.8e-54 217.6 280 49.3
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 4.0e-54 216.5 427 39.1
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 6.9e-54 215.7 314 44.3
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 4.5e-53 213.0 388 39.2
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 7.6e-53 212.2 321 45.2
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 7.6e-53 212.2 300 44.3
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 7.6e-53 212.2 422 38.6
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.0e-52 211.8 394 37.8
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 3.8e-52 209.9 298 44.0
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 3.8e-52 209.9 369 40.4
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.1e-51 208.4 390 38.5
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 2.5e-51 207.2 278 44.2
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 3.2e-51 206.8 389 40.6
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 7.1e-51 205.7 415 39.5
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 9.3e-51 205.3 384 39.8
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 9.3e-51 205.3 386 37.6
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 1.2e-50 204.9 386 37.3
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 1.2e-50 204.9 413 37.3
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 1.6e-50 204.5 444 38.3
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.6e-50 204.5 291 41.9
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 2.1e-50 204.1 259 47.1
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 1.0e-49 201.8 376 39.1
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 1.0e-49 201.8 390 39.2
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 1.0e-49 201.8 390 39.2
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 1.0e-49 201.8 277 46.6
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 1.3e-49 201.4 267 44.9
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 2.3e-49 200.7 424 38.7
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 2.3e-49 200.7 267 44.6
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 3.0e-49 200.3 286 45.5
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.1e-48 198.4 333 40.5
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 1.9e-48 197.6 254 44.9
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 3.3e-48 196.8 440 38.0
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 4.3e-48 196.4 262 44.7
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 2.2e-47 194.1 376 38.0
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 6.3e-47 192.6 291 41.2
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 8.2e-47 192.2 434 37.3
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 8.2e-47 192.2 315 42.2
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 1.5e-45 188.0 363 38.6
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 3.4e-45 186.8 411 35.5
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 1.4e-43 181.4 404 34.4
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 6.1e-42 176.0 295 39.3
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 1.4e-41 174.9 420 37.1
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 1.8e-41 174.5 275 44.7
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 8.8e-41 172.2 289 41.9
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 2.0e-40 171.0 448 33.7
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 2.0e-40 171.0 268 41.0
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 4.8e-39 166.4 414 33.3
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 6.3e-39 166.0 281 40.9
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 6.3e-39 166.0 281 40.9
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 1.3e-36 158.3 412 33.3
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 2.9e-36 157.1 262 44.3
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 3.2e-35 153.7 415 33.7
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 3.2e-35 153.7 415 33.7
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 3.2e-35 153.7 220 39.1
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 9.4e-35 152.1 263 38.4
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 1.8e-33 147.9 282 39.0
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 4.8e-31 139.8 274 34.7
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 1.4e-30 138.3 282 36.5
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 6.5e-28 129.4 260 37.7
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 1.1e-27 128.6 126 54.0
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 3.3e-24 117.1 226 37.6
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.7e-23 114.8 254 31.9
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 4.8e-23 113.2 228 38.6
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.0e-20 105.5 232 34.9
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.1e-19 102.1 232 33.6
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 6.1e-18 96.3 245 33.1
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 2.8e-15 87.4 256 27.7
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 2.8e-15 87.4 252 30.2
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 3.8e-12 77.0 265 26.8
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 9.4e-11 72.4 168 35.1
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 1.3e-07 62.0 150 36.0
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 2.2e-07 61.2 47 57.4
DCAR_025850 Daucus carota HOM05D005322 ORTHO05D006746 3.1e-06 57.4 49 59.2
Cre14.g624600 Chlamydomonas reinhardtii HOM05D005322 ORTHO05D006746 7.0e-06 56.2 90 35.6
TAR625G0743 Trochodendron aralioides HOM05D005322 ORTHO05D006746 9.1e-06 55.8 95 37.9


User provided reference genes

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