Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 4.1e-119 431.4 218 100.0
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 1.0e-114 416.8 218 97.2
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.3e-96 356.7 218 82.1
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 8.6e-93 344.0 218 78.9
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 3.7e-88 328.6 218 75.7
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 4.3e-84 315.1 218 76.6
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 1.4e-79 300.1 179 86.0
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 6.4e-72 274.6 183 77.6
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 1.4e-55 220.3 218 56.0
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.6e-51 206.8 213 54.5
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.1e-50 202.6 213 54.0
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 4.0e-50 202.2 215 52.6
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 6.9e-50 201.4 213 53.5
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 2.9e-48 196.1 188 56.4
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 2.5e-47 193.0 216 49.5
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 5.5e-47 191.8 207 45.9
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.9e-44 183.3 212 49.1
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.9e-44 183.3 216 47.2
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 7.4e-44 181.4 228 45.6
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 7.4e-44 181.4 220 49.1
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.3e-43 180.6 216 47.7
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.6e-43 180.3 220 47.7
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.8e-43 179.5 220 47.3
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 3.7e-43 179.1 212 48.1
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 1.1e-42 177.6 220 47.3
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.4e-42 177.2 208 49.5
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.4e-42 176.4 218 46.8
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 5.3e-42 175.3 215 43.7
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 6.9e-42 174.9 207 45.9
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 6.9e-42 174.9 208 45.7
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 9.0e-42 174.5 208 45.7
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 2.0e-41 173.3 207 44.4
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.5e-41 172.2 219 49.3
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 5.9e-41 171.8 207 45.4
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 5.9e-41 171.8 218 46.3
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 1.0e-40 171.0 220 45.9
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 1.0e-40 171.0 208 48.6
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 2.2e-40 169.9 219 45.7
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 2.2e-40 169.9 208 45.7
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 5.0e-40 168.7 205 47.3
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.1e-39 167.5 223 45.7
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.5e-39 166.4 219 47.0
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 3.2e-39 166.0 218 44.5
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 7.2e-39 164.9 218 44.0
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.1e-38 163.3 209 46.9
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 2.1e-38 163.3 218 42.7
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 3.6e-38 162.5 223 44.4
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 3.6e-38 162.5 225 44.0
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 4.6e-38 162.2 211 45.0
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 6.1e-38 161.8 215 43.7
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 7.9e-38 161.4 179 49.2
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 1.0e-37 161.0 176 48.9
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.0e-37 161.0 209 44.5
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 1.3e-37 160.6 215 42.8
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 5.1e-37 158.7 208 41.8
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 6.7e-37 158.3 206 45.1
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 8.7e-37 157.9 166 47.6
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.9e-36 156.8 208 44.7
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 2.5e-36 156.4 217 42.9
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 3.3e-36 156.0 173 51.4
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.3e-36 156.0 173 51.4
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 3.3e-36 156.0 223 44.8
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 1.3e-35 154.1 212 44.3
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 2.8e-35 152.9 210 41.9
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 2.8e-35 152.9 222 42.8
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 3.7e-35 152.5 215 42.8
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 3.7e-35 152.5 215 40.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 4.8e-35 152.1 214 43.0
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 4.8e-35 152.1 215 41.4
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 6.3e-35 151.8 214 43.0
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 8.2e-35 151.4 207 44.4
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 1.1e-34 151.0 217 44.2
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 1.1e-34 151.0 223 43.9
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.8e-34 150.2 215 43.3
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 2.4e-34 149.8 214 42.5
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 2.4e-34 149.8 215 42.3
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.2e-33 147.5 215 41.4
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 2.0e-33 146.7 214 42.5
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 3.4e-33 146.0 209 43.5
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 3.4e-33 146.0 222 42.3
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 4.5e-33 145.6 157 48.4
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.8e-32 142.5 209 44.0
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 5.0e-32 142.1 204 42.6
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 5.0e-32 142.1 206 40.8
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 1.2e-30 137.5 171 45.6
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 4.6e-30 135.6 138 50.7
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 5.1e-29 132.1 175 42.3
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 6.7e-29 131.7 201 40.3
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.1e-28 131.0 128 54.7
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 1.1e-28 131.0 214 40.2
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 2.6e-28 129.8 128 54.7
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 3.3e-28 129.4 304 32.2
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 4.4e-28 129.0 220 37.3
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 5.7e-28 128.6 159 44.7
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.7e-27 127.1 139 49.6
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 2.2e-27 126.7 150 48.0
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 2.8e-27 126.3 208 37.5
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 8.2e-27 124.8 156 44.9
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.4e-26 124.0 161 44.7
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.4e-26 123.2 159 42.8
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.4e-26 123.2 167 41.9
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 6.9e-26 121.7 213 37.1
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.2e-25 120.9 199 38.2
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 1.5e-25 120.6 172 44.2
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.5e-25 120.6 166 41.6
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 2.6e-25 119.8 214 35.5
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 1.7e-24 117.1 134 50.0
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 2.2e-24 116.7 214 34.1
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 2.2e-24 116.7 188 41.0
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 5.0e-24 115.5 166 39.8
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 5.0e-24 115.5 206 35.0
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.0e-24 115.5 164 40.9
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 6.5e-24 115.2 216 37.5
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.1e-23 114.4 165 41.2
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 1.1e-23 114.4 175 41.1
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.9e-23 113.6 142 42.3
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 4.2e-23 112.5 177 40.7
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 4.2e-23 112.5 148 42.6
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 7.2e-23 111.7 185 37.8
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 9.4e-23 111.3 178 41.0
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 2.1e-22 110.2 215 36.7
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 2.1e-22 110.2 159 37.7
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 2.7e-22 109.8 127 46.5
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 2.7e-22 109.8 116 40.5
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 3.6e-22 109.4 126 50.8
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 3.6e-22 109.4 204 35.8
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 7.9e-22 108.2 166 40.4
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 1.0e-21 107.8 124 50.0
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.8e-21 107.1 202 36.6
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 5.2e-21 105.5 70 65.7
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 8.8e-21 104.8 129 45.7
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 1.5e-20 104.0 164 36.6
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 3.3e-20 102.8 131 41.2
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 4.4e-20 102.4 204 35.8
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 4.4e-20 102.4 145 38.6
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 7.4e-20 101.7 171 38.6
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.2e-19 100.1 93 53.8
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 4.8e-19 99.0 114 49.1
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 6.3e-19 98.6 128 43.0
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.8e-18 97.1 114 44.7
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 3.1e-18 96.3 133 42.9
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 7.0e-18 95.1 83 57.8
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 6.5e-16 88.6 129 43.4
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.5e-15 87.4 212 34.9
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 2.5e-15 86.7 150 33.3
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 5.5e-15 85.5 86 51.2
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 1.2e-14 84.3 191 29.3
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 3.0e-13 79.7 187 27.8
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 1.5e-12 77.4 56 60.7
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 9.7e-12 74.7 74 45.9
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 1.3e-11 74.3 104 35.6
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 9.1e-10 68.2 173 32.4
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.2e-09 67.8 122 36.9
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 4.5e-09 65.9 160 33.1
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 8.5e-08 61.6 39 66.7
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 1.5e-07 60.8 121 30.6
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 2.5e-07 60.1 89 42.7
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.2e-07 59.7 127 39.4
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.2e-07 59.7 87 39.1
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 8.0e-06 55.1 92 38.0


User provided reference genes

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