Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 1.4e-54 216.1 114 100.0
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 4.1e-54 214.5 114 99.1
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 4.1e-54 214.5 114 99.1
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 8.0e-50 200.3 114 91.2
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 5.2e-49 197.6 114 92.1
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.5e-48 196.1 114 91.2
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 1.4e-46 189.5 114 83.3
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 2.0e-45 185.7 110 85.5
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 2.7e-45 185.3 114 83.3
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 2.7e-45 185.3 114 83.3
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 2.7e-45 185.3 114 83.3
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 2.7e-45 185.3 115 84.3
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 3.5e-45 184.9 145 72.4
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 6.0e-45 184.1 114 85.1
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 83.3
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.3e-44 182.2 115 81.7
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 81.6
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 80.7
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 80.7
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 79.8
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 79.8
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 6.6e-44 180.6 114 79.8
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 6.6e-44 180.6 110 83.6
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.1e-43 179.9 112 79.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 79.8
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 1.1e-43 179.9 112 80.4
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 1.5e-43 179.5 112 80.4
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.9e-43 179.1 112 78.6
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 79.8
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 2.5e-43 178.7 112 79.5
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 80.7
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 80.7
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 79.8
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 78.9
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 79.8
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 3.3e-43 178.3 112 79.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 78.1
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 5.6e-43 177.6 115 79.1
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 5.6e-43 177.6 115 79.1
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 5.6e-43 177.6 115 79.1
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 5.6e-43 177.6 115 79.1
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 79.8
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 81.6
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 1.2e-42 176.4 112 79.5
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.2e-42 176.4 112 77.7
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 80.7
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 78.9
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 79.8
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 77.2
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 2.8e-42 175.3 112 77.7
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 77.2
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 3.6e-42 174.9 112 80.4
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 4.7e-42 174.5 115 80.0
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 4.7e-42 174.5 115 78.3
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 78.9
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 78.1
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 8.1e-42 173.7 115 78.3
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 8.1e-42 173.7 115 79.1
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.1e-41 173.3 114 78.1
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 1.1e-41 173.3 115 78.3
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.1e-41 173.3 112 76.8
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 76.3
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 76.3
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 76.3
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 79.8
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 2.3e-41 172.2 115 75.7
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 83.3
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 76.3
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 75.4
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 3.1e-41 171.8 112 77.7
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 78.1
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 76.3
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 76.3
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 76.3
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 5.2e-41 171.0 115 77.4
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 74.6
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 75.0
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 75.9
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 79.5
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 8.9e-41 170.2 112 75.9
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.2e-40 169.9 112 75.0
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 78.9
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 3.4e-40 168.3 112 75.0
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 5.8e-40 167.5 114 76.3
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 9.8e-40 166.8 114 76.3
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 9.8e-40 166.8 114 76.3
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 9.8e-40 166.8 109 76.1
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 1.7e-39 166.0 113 76.1
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 2.9e-39 165.2 113 72.6
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 3.7e-39 164.9 104 80.8
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 4.9e-39 164.5 111 75.7
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 4.9e-39 164.5 112 76.8
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 8.3e-39 163.7 112 75.0
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 2.4e-38 162.2 111 74.8
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 2.4e-38 162.2 113 71.7
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 3.2e-38 161.8 114 74.6
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 3.2e-38 161.8 114 74.6
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 3.2e-38 161.8 114 74.6
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 3.2e-38 161.8 106 76.4
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.2e-38 161.8 112 75.9
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.1e-38 161.4 146 62.3
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 5.4e-38 161.0 142 62.7
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 7.1e-38 160.6 114 73.7
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.6e-37 159.5 114 72.8
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 1.6e-37 159.5 114 73.7
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.6e-37 159.5 114 73.7
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 3.5e-37 158.3 114 73.7
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 6.0e-37 157.5 112 73.2
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 8.6e-36 153.7 114 71.1
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.9e-35 152.5 114 69.3
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.8e-34 148.7 111 71.2
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 8.1e-34 147.1 81 91.4
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.8e-33 146.0 111 70.3
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.3e-33 145.6 94 77.7
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.2e-32 143.3 81 90.1
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 2.0e-32 142.5 111 66.7
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 3.4e-32 141.7 84 88.1
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.9e-31 138.7 115 67.0
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 4.9e-31 137.9 83 85.5
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 4.9e-31 137.9 83 85.5
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 8.4e-31 137.1 77 90.9
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 2.4e-30 135.6 79 88.6
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 7.1e-30 134.0 100 71.0
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.9e-28 128.3 94 71.3
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.2e-26 123.2 72 86.1
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.8e-25 119.4 65 90.8
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 4.0e-25 118.2 77 77.9
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.3e-23 113.2 78 73.1
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 8.4e-23 110.5 112 54.5
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 3.2e-22 108.6 106 54.7
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 3.2e-22 108.6 114 55.3
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 9.3e-22 107.1 104 57.7
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 4.6e-21 104.8 72 72.2
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 6.6e-20 100.9 77 67.5
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 5.6e-19 97.8 77 66.2
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.6e-19 97.8 109 46.8
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 7.3e-19 97.4 108 50.9
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.6e-19 97.1 100 56.0
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 6.2e-18 94.4 63 73.0
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 1.4e-17 93.2 65 70.8
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.2e-15 85.9 80 53.8
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 2.9e-15 85.5 95 52.6
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 6.4e-15 84.3 106 46.2
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 6.4e-15 84.3 57 75.4
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.9e-14 82.8 104 45.2
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.2e-14 81.6 45 91.1
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 4.2e-14 81.6 51 82.4
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 2.1e-13 79.3 50 80.0
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 7.9e-13 77.4 106 44.3
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 1.0e-12 77.0 44 84.1
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.8e-12 76.3 51 78.4
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 3.9e-12 75.1 44 81.8
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 8.7e-12 73.9 55 65.5
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 1.1e-11 73.6 44 79.5
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.5e-11 73.2 95 50.5
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 3.3e-11 72.0 95 42.1
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.6e-11 71.2 51 64.7
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 4.8e-10 68.2 99 43.4
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 9.0e-09 63.9 97 42.3
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.0e-08 62.8 59 49.2
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 2.6e-08 62.4 60 51.7
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 4.5e-08 61.6 91 39.6


User provided reference genes

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