Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 2.3e-136 488.8 235 100.0
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 6.8e-128 460.7 223 99.1
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 7.3e-122 440.7 228 92.1
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 2.3e-112 409.1 227 82.4
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 1.7e-110 402.9 232 81.0
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 1.9e-109 399.4 227 79.7
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 3.5e-108 395.2 230 80.0
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 1.0e-107 393.7 230 78.3
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 1.3e-107 393.3 230 77.4
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 1.3e-107 393.3 230 78.3
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 1.7e-107 392.9 227 80.6
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 1.7e-107 392.9 233 76.4
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 5.1e-107 391.3 225 78.7
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 5.1e-107 391.3 225 78.7
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 5.1e-107 391.3 229 78.6
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 1.9e-106 389.4 233 76.4
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 1.9e-106 389.4 230 77.4
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 2.5e-106 389.0 230 78.3
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 2.5e-106 389.0 230 77.4
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 2.5e-106 389.0 230 77.4
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 7.3e-106 387.5 231 77.9
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 3.6e-105 385.2 233 77.7
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 3.6e-105 385.2 229 76.9
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 4.7e-105 384.8 262 71.8
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 5.2e-104 381.3 233 77.7
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 6.8e-104 380.9 207 88.4
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 1.5e-103 379.8 228 78.5
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 2.6e-103 379.0 235 75.7
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 4.4e-103 378.3 223 78.0
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 9.9e-103 377.1 233 76.0
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 4.9e-102 374.8 227 75.8
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 3.2e-101 372.1 230 75.7
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 7.1e-101 370.9 225 76.0
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 9.3e-101 370.5 225 78.2
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 2.1e-100 369.4 230 73.0
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 2.7e-100 369.0 238 71.8
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 2.7e-100 369.0 237 73.8
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 3.5e-100 368.6 243 73.7
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 4.6e-100 368.2 230 73.5
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 6.0e-100 367.9 232 72.8
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 7.8e-100 367.5 231 72.3
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 7.8e-100 367.5 230 74.3
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 1.0e-99 367.1 230 74.8
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 3.0e-99 365.5 228 73.7
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 3.9e-99 365.2 230 72.6
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 8.7e-99 364.0 232 75.0
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 1.6e-97 359.8 230 73.0
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 2.1e-97 359.4 230 73.5
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 2.8e-97 359.0 231 72.7
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 2.8e-97 359.0 232 74.1
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 3.6e-97 358.6 223 73.5
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 4.8e-97 358.2 230 71.7
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 8.1e-97 357.5 229 72.9
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 1.8e-96 356.3 219 74.4
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 2.4e-96 355.9 223 74.9
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 2.4e-96 355.9 230 71.7
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 3.1e-96 355.5 222 73.9
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 1.2e-95 353.6 233 69.5
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 1.5e-95 353.2 219 74.0
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 1.5e-95 353.2 219 74.0
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 2.0e-95 352.8 219 73.5
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 4.4e-95 351.7 230 73.0
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 5.8e-95 351.3 228 71.9
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 1.1e-93 347.1 231 70.6
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 5.4e-93 344.7 280 61.8
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 4.6e-92 341.7 226 66.4
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 1.9e-90 336.3 251 64.1
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 1.8e-88 329.7 231 64.9
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 3.1e-88 328.9 231 65.4
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 4.0e-88 328.6 194 78.4
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 4.0e-88 328.6 224 67.4
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 5.3e-88 328.2 223 71.3
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 6.9e-88 327.8 223 71.3
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 1.2e-87 327.0 206 73.3
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 4.5e-87 325.1 202 72.3
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 2.9e-86 322.4 199 74.4
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 5.6e-82 308.1 204 72.5
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.3e-81 307.0 207 72.9
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.1e-81 306.2 180 80.0
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 4.8e-81 305.1 203 70.4
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 9.0e-80 300.8 184 72.8
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 3.4e-79 298.9 207 69.1
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 3.2e-77 292.4 220 64.1
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 1.2e-76 290.4 229 61.1
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 7.9e-76 287.7 191 68.6
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 1.2e-71 273.9 165 78.8
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.4e-66 254.6 211 58.8
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 1.6e-65 253.4 159 73.6
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 2.8e-65 252.7 231 57.1
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 3.1e-64 249.2 241 53.1
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 5.0e-62 241.9 174 67.8
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 5.5e-61 238.4 222 47.3
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 1.6e-60 236.9 174 67.2
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.6e-60 236.9 174 66.7
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 3.3e-58 229.2 199 58.3
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 6.3e-57 224.9 222 45.9
CsaV3_UNG224630 Cucumis sativus L. HOM05D001245 ORTHO05D004475 6.9e-56 221.5 135 78.5
SHI09206 Sapria himalayana HOM05D001245 ORTHO05D004475 2.9e-54 216.1 155 67.1
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 1.1e-48 197.6 202 52.5
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.5e-45 187.2 168 55.4
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 3.2e-45 186.0 156 63.5
RcHm_v2.0_Chr7g0211681 Rosa chinensis HOM05D001245 ORTHO05D004475 2.3e-43 179.9 109 75.2
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 2.8e-41 172.9 115 72.2
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 2.4e-40 169.9 122 67.2
CsaV3_UNG224670 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.7e-39 166.4 105 77.1
CsaV3_UNG111830 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.3e-38 164.1 100 80.0
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 6.5e-38 161.8 108 71.3
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.2e-37 158.3 102 75.5
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 7.5e-34 148.3 252 33.7
SHI09208 Sapria himalayana HOM05D001245 ORTHO05D000023 2.0e-26 123.6 74 67.6
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 2.4e-24 116.7 170 36.5
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 2.3e-19 100.1 110 41.8
CsaV3_3G026500 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.7e-17 94.0 60 68.3
CsaV3_UNG224660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.9e-17 92.4 60 68.3
Eucgr.B02095 Eucalyptus grandis HOM05D001245 ORTHO05D004475 5.9e-15 85.5 109 43.1
CsaV3_5G018940 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.0e-14 82.4 52 84.6
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 2.3e-11 73.6 99 42.4
MCO14G357 Micromonas commoda HOM05D001245 ORTHO05D004475 3.4e-10 69.7 130 32.3
Duzib041G0266 Durio zibethinus HOM05D001245 ORTHO05D005230 4.4e-10 69.3 47 66.0
Cre12.g515900 Chlamydomonas reinhardtii HOM05D001245 ORTHO05D004475 1.2e-07 61.2 138 26.1
HPP92_002159 Vanilla planifolia HOM05D001245 ORTHO05D004475 4.6e-07 59.3 40 67.5
arahy.Tifrunner.gnm1.ann1.FDL07N Arachis hypogaea HOM05D001003 ORTHO05D003884 8.6e-06 55.1 33 69.7
PRCOL_00000968 Prasinoderma coloniale HOM05D001245 ORTHO05D004475 8.6e-06 55.1 73 34.2


User provided reference genes

Program Settings