Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.9e-130 469.2 236 100.0
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 5.2e-128 461.1 235 98.3
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 7.1e-109 397.5 239 86.2
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.0e-107 392.1 239 84.9
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 8.1e-105 384.0 239 83.3
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.5e-103 379.8 230 83.0
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 4.6e-100 368.2 204 87.7
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 4.5e-95 351.7 228 81.1
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.4e-93 346.7 239 75.3
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.8e-75 286.6 156 84.0
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 8.8e-75 284.3 188 74.5
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 2.5e-74 282.7 221 64.7
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 4.3e-74 282.0 156 81.4
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 9.7e-74 280.8 228 62.3
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 9.7e-74 280.8 235 61.7
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 4.8e-73 278.5 146 88.4
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 8.2e-73 277.7 223 63.7
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.8e-72 276.6 234 64.5
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 2.4e-72 276.2 151 81.5
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.4e-72 276.2 156 81.4
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 3.1e-72 275.8 223 64.1
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 4.1e-72 275.4 209 65.6
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 6.9e-72 274.6 155 78.7
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 6.9e-72 274.6 221 62.9
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 6.9e-72 274.6 220 65.0
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 9.1e-72 274.2 169 76.3
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 2.0e-71 273.1 151 82.1
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 2.0e-71 273.1 156 76.9
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.4e-71 272.3 155 78.7
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 4.5e-71 271.9 223 62.3
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 5.9e-71 271.6 230 65.2
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.3e-70 270.4 223 64.6
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.3e-70 270.4 210 61.9
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.3e-70 270.4 151 81.5
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 2.2e-70 269.6 188 69.7
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 2.9e-70 269.2 236 58.1
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 3.8e-70 268.9 235 59.1
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 3.8e-70 268.9 219 63.0
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 5.0e-70 268.5 152 77.6
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 6.5e-70 268.1 164 76.2
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 8.5e-70 267.7 243 58.0
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 8.5e-70 267.7 221 64.7
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.9e-69 266.5 194 67.0
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.2e-69 265.8 145 82.8
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 9.4e-69 264.2 184 69.0
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 9.4e-69 264.2 156 75.6
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 2.1e-68 263.1 156 76.9
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 4.7e-68 261.9 139 87.8
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 4.7e-68 261.9 195 64.1
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 6.1e-68 261.5 159 72.3
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.0e-67 260.8 242 57.0
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.4e-67 260.4 154 74.7
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.8e-67 260.0 230 62.6
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 3.0e-67 259.2 154 74.0
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.7e-67 258.1 166 72.9
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 8.8e-67 257.7 154 73.4
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 8.8e-67 257.7 165 73.3
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-66 257.3 149 77.2
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.1e-66 257.3 187 68.4
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.5e-66 256.9 176 69.9
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.6e-66 256.1 166 72.3
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.6e-66 256.1 167 71.9
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.3e-66 255.8 274 51.5
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 4.4e-66 255.4 223 60.1
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 4.4e-66 255.4 231 58.4
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 5.7e-66 255.0 221 58.8
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.3e-65 253.8 173 69.4
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.7e-65 253.4 223 61.0
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 6.3e-65 251.5 221 58.4
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 5.3e-64 248.4 236 54.7
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 9.1e-64 247.7 162 71.6
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 9.1e-64 247.7 155 72.3
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 2.0e-63 246.5 171 64.9
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.6e-63 246.1 275 50.9
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 4.5e-63 245.4 143 77.6
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 5.0e-62 241.9 142 77.5
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 5.0e-62 241.9 202 61.4
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 5.0e-62 241.9 222 56.8
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 9.4e-61 237.7 143 78.3
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 6.1e-60 235.0 226 54.9
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.8e-59 233.4 222 56.3
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.8e-59 233.4 128 80.5
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.0e-59 232.3 221 54.8
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 5.2e-59 231.9 217 59.4
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 8.8e-59 231.1 211 54.0
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.5e-58 230.3 176 65.3
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.5e-58 230.3 151 68.2
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.0e-58 229.9 223 52.5
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.4e-58 228.8 151 67.5
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.4e-58 228.8 151 67.5
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.4e-58 228.8 203 61.1
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 5.7e-58 228.4 146 68.5
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 2.2e-57 226.5 206 59.2
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 2.8e-57 226.1 220 54.5
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.7e-57 225.7 220 52.7
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 6.3e-57 224.9 131 77.1
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 5.3e-56 221.9 154 64.3
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 5.3e-56 221.9 150 72.0
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 7.0e-56 221.5 213 53.5
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 7.7e-55 218.0 181 61.9
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.3e-54 217.2 210 56.7
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.3e-54 217.2 202 55.0
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 3.8e-54 215.7 215 52.6
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 1.9e-53 213.4 221 51.1
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.9e-53 213.4 174 60.3
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.2e-53 212.2 156 60.9
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.2e-53 212.2 156 60.3
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.6e-52 210.3 215 48.4
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 2.7e-52 209.5 228 47.4
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.4e-51 207.2 137 70.1
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 2.3e-51 206.5 258 46.5
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 3.0e-51 206.1 183 59.6
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 8.8e-51 204.5 145 60.0
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.0e-50 203.4 185 54.6
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.4e-50 202.6 204 49.5
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.4e-50 202.2 145 58.6
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 5.7e-50 201.8 148 59.5
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.8e-49 199.5 122 70.5
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 2.8e-49 199.5 190 55.3
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 6.3e-49 198.4 145 57.2
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 6.3e-49 198.4 145 57.2
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 7.0e-48 194.9 154 56.5
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 9.1e-48 194.5 145 55.9
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 9.1e-48 194.5 145 55.9
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 3.5e-47 192.6 114 74.6
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 5.9e-47 191.8 146 56.8
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-46 191.0 147 54.4
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.0e-46 191.0 147 54.4
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-46 190.7 147 54.4
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.7e-46 190.3 143 56.6
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.5e-45 187.2 98 84.7
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.6e-44 182.6 166 60.8
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 2.3e-43 179.9 232 48.3
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 3.4e-42 176.0 117 70.1
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.7e-41 173.7 134 57.5
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 2.2e-41 173.3 234 48.7
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.8e-41 172.9 121 57.9
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 1.4e-40 170.6 150 56.7
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 9.1e-40 167.9 143 65.7
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 3.5e-39 166.0 143 46.9
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.9e-39 165.2 149 57.0
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.8e-38 162.5 149 57.0
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.2e-36 157.5 162 49.4
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 3.4e-34 149.4 84 79.8
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 5.7e-34 148.7 211 40.8
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 5.7e-34 148.7 121 64.5
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 2.9e-33 146.4 165 48.5
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 6.4e-33 145.2 137 56.2
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 3.2e-32 142.9 145 45.5
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 4.6e-31 139.0 159 47.8
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 3.9e-30 136.0 182 48.4
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 3.3e-29 132.9 141 51.8
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 3.3e-29 132.9 146 40.4
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 5.6e-29 132.1 68 85.3
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.0e-27 127.9 64 87.5
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 2.0e-26 123.6 184 34.2
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 5.8e-26 122.1 159 44.0
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 2.4e-24 116.7 65 78.5
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.0e-22 109.8 228 35.1
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 8.9e-19 98.2 56 82.1
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 5.4e-16 89.0 113 51.3
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 4.6e-15 85.9 107 53.3
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.3e-14 84.3 85 51.8
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 3.6e-12 76.3 71 50.7
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 2.0e-10 70.5 112 37.5
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 2.0e-10 70.5 102 39.2
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-09 67.4 109 36.7
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 2.2e-09 67.0 109 34.9
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 9.2e-08 61.6 65 53.8
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 9.2e-08 61.6 65 53.8


User provided reference genes

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