Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 2.0e-138 495.7 245 100.0
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 3.0e-126 455.3 230 97.0
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.0e-107 390.6 238 83.6
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.3e-102 375.9 193 96.9
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 4.2e-96 355.1 231 77.9
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.7e-87 325.9 223 74.4
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 6.9e-83 311.2 183 79.2
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 2.6e-82 309.3 204 72.5
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 3.4e-82 308.9 197 75.6
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.3e-81 307.0 252 64.7
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.3e-81 307.0 178 80.3
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.9e-81 305.8 239 66.5
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 4.7e-79 298.5 207 72.0
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 8.2e-76 287.7 196 70.9
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 1.1e-75 287.3 178 77.5
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 1.4e-75 287.0 241 62.7
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 5.9e-74 281.6 174 76.4
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 2.9e-73 279.3 220 63.6
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 5.0e-73 278.5 176 72.7
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 6.5e-73 278.1 208 66.8
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.9e-72 276.6 232 61.6
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 3.2e-72 275.8 218 64.7
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 5.5e-72 275.0 169 78.1
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 7.2e-72 274.6 173 75.1
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.6e-71 273.5 170 77.1
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.6e-71 273.5 199 69.8
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.4e-70 270.4 174 74.1
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.4e-70 270.4 204 66.2
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.8e-70 270.0 206 63.6
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 5.2e-70 268.5 174 74.1
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 5.2e-70 268.5 178 74.2
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 6.7e-70 268.1 164 75.6
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 8.8e-70 267.7 186 68.8
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.5e-69 266.9 176 72.2
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.0e-69 266.5 230 59.1
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.6e-69 266.2 230 59.1
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 4.4e-69 265.4 184 68.5
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 5.7e-69 265.0 232 59.1
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 5.7e-69 265.0 194 66.0
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 7.5e-69 264.6 176 72.7
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 7.5e-69 264.6 236 60.2
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 1.7e-68 263.5 207 63.3
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.7e-68 262.3 184 67.4
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 3.7e-68 262.3 211 62.6
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.7e-68 262.3 227 62.1
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.1e-67 260.8 209 63.6
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.8e-67 260.0 200 64.5
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.8e-67 260.0 187 67.9
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.8e-67 260.0 172 73.3
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 4.1e-67 258.8 176 71.0
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.2e-66 257.3 223 58.7
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 1.2e-66 257.3 200 64.5
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 2.7e-66 256.1 197 64.5
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 4.5e-66 255.4 187 66.8
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 5.9e-66 255.0 205 61.5
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 5.9e-66 255.0 214 58.9
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 1.3e-65 253.8 172 71.5
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 2.9e-65 252.7 224 58.5
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 3.8e-65 252.3 170 72.4
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 3.8e-65 252.3 218 56.9
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 3.8e-65 252.3 198 63.6
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 5.0e-65 251.9 202 63.9
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 6.5e-65 251.5 231 58.0
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 6.5e-65 251.5 165 71.5
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 1.5e-64 250.4 178 67.4
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.5e-64 250.4 198 63.1
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.5e-64 250.4 180 65.6
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.9e-64 250.0 203 60.6
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 2.5e-64 249.6 176 65.3
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 4.2e-64 248.8 196 61.2
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 9.4e-64 247.7 176 66.5
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 2.1e-63 246.5 162 70.4
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.1e-63 246.5 267 52.1
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 3.6e-63 245.7 140 79.3
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 3.6e-63 245.7 183 64.5
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 4.7e-63 245.4 189 61.9
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 6.1e-63 245.0 190 62.1
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 6.1e-63 245.0 168 70.2
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 8.0e-63 244.6 221 59.3
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.0e-62 244.2 190 62.6
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 4.0e-62 242.3 179 64.2
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.0e-62 242.3 150 74.0
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 5.2e-62 241.9 162 72.2
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 8.8e-62 241.1 164 70.7
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.2e-61 240.7 208 59.6
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 1.5e-61 240.4 160 70.0
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.5e-61 240.4 209 57.9
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 2.0e-61 240.0 190 62.1
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 3.4e-61 239.2 169 67.5
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 4.4e-61 238.8 191 62.3
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 4.4e-61 238.8 188 61.2
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 5.7e-61 238.4 202 61.4
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.3e-60 237.3 208 58.7
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.3e-60 237.3 221 56.1
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 2.2e-60 236.5 200 60.5
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 2.8e-60 236.1 184 62.0
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 4.8e-60 235.3 163 66.9
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 4.8e-60 235.3 193 59.6
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 6.3e-60 235.0 170 66.5
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 8.3e-60 234.6 185 62.2
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 8.3e-60 234.6 162 69.1
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.1e-59 234.2 172 66.3
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 5.4e-59 231.9 236 54.2
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 7.0e-59 231.5 146 73.3
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 7.0e-59 231.5 188 61.7
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 9.1e-59 231.1 150 71.3
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.2e-58 230.7 185 60.0
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.6e-58 230.3 172 61.0
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 2.0e-58 229.9 169 67.5
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 4.5e-58 228.8 166 65.7
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.9e-58 228.4 203 56.2
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 1.0e-57 227.6 182 59.9
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.0e-57 227.6 196 59.2
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.9e-57 226.1 227 51.1
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 3.8e-57 225.7 186 62.4
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 6.5e-57 224.9 159 65.4
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 2.5e-56 223.0 159 65.4
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 2.5e-56 223.0 179 60.3
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 4.2e-56 222.2 150 69.3
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 9.5e-56 221.1 159 64.2
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 9.5e-56 221.1 159 64.2
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 4.7e-55 218.8 193 56.0
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 2.3e-54 216.5 208 53.8
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.2e-53 214.2 148 66.9
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 5.7e-53 211.8 182 57.7
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.3e-52 210.7 150 65.3
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 2.2e-52 209.9 173 57.8
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 4.9e-52 208.8 144 67.4
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 5.4e-51 205.3 163 60.7
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 2.0e-50 203.4 189 54.0
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.3e-49 199.9 161 60.9
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 5.0e-49 198.7 195 52.3
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.3e-48 195.7 161 59.6
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 9.5e-48 194.5 128 69.5
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.2e-47 194.1 145 64.1
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 4.0e-46 189.1 181 53.0
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 5.2e-46 188.7 215 47.9
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 8.9e-46 188.0 225 47.6
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 4.4e-45 185.7 146 58.9
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.2e-44 183.3 199 51.3
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.1e-43 181.0 115 74.8
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.2e-42 177.6 146 58.9
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 5.9e-42 175.3 163 55.2
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 7.8e-42 174.9 151 55.0
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 5.0e-41 172.2 148 56.8
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.1e-40 171.0 136 60.3
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 9.5e-40 167.9 120 60.8
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 6.2e-39 165.2 107 73.8
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 6.2e-39 165.2 161 55.3
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.8e-38 163.7 129 59.7
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 5.2e-38 162.2 149 55.0
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.9e-35 153.7 98 71.4
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.1e-35 152.5 96 72.9
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.7e-33 147.1 199 41.7
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.8e-31 139.8 149 51.0
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 3.7e-28 129.4 173 42.2
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 8.3e-28 128.3 245 34.3
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 5.4e-27 125.6 88 64.8
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.0e-26 122.1 71 80.3
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.8e-26 121.7 71 78.9
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 2.3e-25 120.2 128 46.9
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.5e-24 116.7 86 58.1
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 6.2e-23 112.1 70 71.4
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.9e-20 103.2 60 71.7
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 3.0e-17 93.2 94 51.1
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 8.4e-12 75.1 39 84.6
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 1.2e-10 71.2 61 55.7
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 5.1e-09 65.9 50 64.0
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.5e-08 64.3 39 79.5


User provided reference genes

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