Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 2.1e-32 141.7 69 100.0
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 3.6e-29 131.0 68 92.6
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 6.4e-26 120.2 68 83.8
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.7e-23 112.1 68 77.9
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.5e-22 109.0 68 75.0
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.5e-22 108.2 68 75.0
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 4.7e-21 104.0 68 73.5
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 6.2e-21 103.6 68 73.5
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 1.1e-20 102.8 68 69.1
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 2.0e-19 98.6 68 69.1
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 2.0e-19 98.6 68 67.6
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 1.3e-18 95.9 68 66.2
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 1.3e-18 95.9 68 66.2
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 1.1e-14 82.8 68 60.3
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.9e-14 82.0 54 66.7
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.9e-14 82.0 54 66.7
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 9.6e-14 79.7 61 59.0
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 1.3e-13 79.3 68 55.9
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 8.1e-13 76.6 60 55.0
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 8.1e-13 76.6 68 52.9
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 8.1e-13 76.6 61 54.1
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.1e-12 76.3 52 61.5
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 1.1e-12 76.3 60 56.7
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 1.8e-12 75.5 59 59.3
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 1.8e-12 75.5 68 54.4
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 2.4e-12 75.1 54 59.3
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 2.4e-12 75.1 60 58.3
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 3.1e-12 74.7 60 56.7
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 4.0e-12 74.3 60 53.3
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 4.0e-12 74.3 68 50.0
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 5.3e-12 73.9 60 56.7
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 5.3e-12 73.9 61 54.1
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 1.5e-11 72.4 65 49.2
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 2.0e-11 72.0 37 78.4
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 2.6e-11 71.6 70 50.0
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 2.6e-11 71.6 60 51.7
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 3.4e-11 71.2 60 53.3
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 3.4e-11 71.2 45 64.4
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 3.4e-11 71.2 45 64.4
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 4.5e-11 70.9 68 51.5
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 4.5e-11 70.9 52 59.6
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 5.8e-11 70.5 60 53.3
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 7.6e-11 70.1 60 53.3
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 7.6e-11 70.1 60 50.0
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 7.6e-11 70.1 60 50.0
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 9.9e-11 69.7 60 53.3
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 9.9e-11 69.7 61 54.1
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 9.9e-11 69.7 60 51.7
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 1.3e-10 69.3 60 55.0
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 1.3e-10 69.3 60 55.0
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.7e-10 68.9 68 50.0
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.7e-10 68.9 52 59.6
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 2.2e-10 68.6 41 65.9
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 2.9e-10 68.2 60 53.3
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.9e-10 68.2 65 52.3
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 2.9e-10 68.2 60 56.7
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 2.9e-10 68.2 39 74.4
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 3.8e-10 67.8 55 56.4
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 4.9e-10 67.4 68 42.6
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 4.9e-10 67.4 52 57.7
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 4.9e-10 67.4 68 50.0
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 4.9e-10 67.4 59 54.2
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 6.4e-10 67.0 68 47.1
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 6.4e-10 67.0 66 45.5
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 6.4e-10 67.0 51 56.9
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 8.4e-10 66.6 60 51.7
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 8.4e-10 66.6 68 51.5
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 8.4e-10 66.6 57 52.6
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 1.1e-09 66.2 38 71.1
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 1.1e-09 66.2 76 43.4
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 1.1e-09 66.2 53 58.5
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 1.1e-09 66.2 68 48.5
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 1.4e-09 65.9 70 52.9
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 1.4e-09 65.9 60 50.0
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 1.4e-09 65.9 60 50.0
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 1.4e-09 65.9 66 45.5
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 1.9e-09 65.5 60 50.0
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 1.9e-09 65.5 66 53.0
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 2.4e-09 65.1 65 52.3
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 2.4e-09 65.1 65 52.3
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 2.4e-09 65.1 68 48.5
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 2.4e-09 65.1 68 48.5
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 3.2e-09 64.7 68 50.0
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 4.2e-09 64.3 58 48.3
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 4.2e-09 64.3 68 50.0
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 4.2e-09 64.3 68 50.0
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 4.2e-09 64.3 76 44.7
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 4.2e-09 64.3 37 70.3
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 5.4e-09 63.9 37 67.6
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 5.4e-09 63.9 37 67.6
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 5.4e-09 63.9 37 67.6
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 5.4e-09 63.9 37 67.6
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 5.4e-09 63.9 37 67.6
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 5.4e-09 63.9 37 67.6
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 5.4e-09 63.9 37 67.6
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 5.4e-09 63.9 37 67.6
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 5.4e-09 63.9 37 67.6
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 5.4e-09 63.9 37 67.6
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 7.1e-09 63.5 37 67.6
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 7.1e-09 63.5 60 51.7
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 9.3e-09 63.2 68 48.5
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 1.2e-08 62.8 76 42.1
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 1.6e-08 62.4 37 67.6
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 1.6e-08 62.4 42 59.5
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 1.6e-08 62.4 60 46.7
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 1.6e-08 62.4 68 50.0
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 1.6e-08 62.4 76 43.4
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 1.6e-08 62.4 38 65.8
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 2.7e-08 61.6 60 46.7
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 2.7e-08 61.6 66 45.5
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 3.5e-08 61.2 37 64.9
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 3.5e-08 61.2 68 44.1
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 6.0e-08 60.5 65 46.2
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 6.0e-08 60.5 64 46.9
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 7.9e-08 60.1 66 43.9
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 1.0e-07 59.7 67 43.3
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 1.0e-07 59.7 67 43.3
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 1.0e-07 59.7 60 43.3
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 1.0e-07 59.7 48 52.1
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 1.3e-07 59.3 37 67.6
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 3.9e-07 57.8 71 40.8
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 6.7e-07 57.0 69 42.0
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 7.4e-06 53.5 33 66.7


User provided reference genes

Program Settings