Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 0.0e+00 1085.1 562 100.0
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 1.3e-281 972.6 562 89.0
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 3.7e-281 971.1 562 89.1
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 7.0e-264 913.7 562 82.4
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 5.9e-263 910.6 562 82.4
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 5.9e-263 910.6 562 82.4
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 8.6e-262 906.7 562 81.9
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.0e-259 899.8 562 82.0
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.8e-259 899.0 562 81.3
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 1.8e-259 899.0 562 80.4
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 6.8e-259 897.1 562 80.4
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 1.3e-257 892.9 562 79.9
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 1.7e-257 892.5 562 81.3
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.4e-256 889.4 562 81.0
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 1.2e-255 886.3 562 80.6
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 2.0e-255 885.6 562 80.2
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 1.1e-253 879.8 562 78.8
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 2.5e-253 878.6 561 78.8
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 7.3e-253 877.1 601 75.0
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 7.3e-253 877.1 562 80.1
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 6.2e-252 874.0 562 79.5
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 8.0e-252 873.6 576 81.2
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 1.4e-251 872.8 563 79.2
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 1.3e-249 866.3 576 79.0
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 4.1e-248 861.3 562 77.9
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 1.6e-247 859.4 562 79.4
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 6.0e-247 857.4 562 78.1
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 6.0e-247 857.4 562 78.8
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 7.8e-247 857.1 558 79.6
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 5.1e-246 854.4 563 78.0
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 6.6e-246 854.0 562 77.4
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 2.5e-245 852.0 562 77.6
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 3.3e-245 851.7 562 76.9
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 4.3e-245 851.3 562 77.4
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 5.6e-245 850.9 562 76.9
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 7.3e-245 850.5 627 71.5
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 1.2e-244 849.7 562 77.6
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 4.7e-244 847.8 563 77.8
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 8.1e-244 847.0 562 77.9
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 1.8e-243 845.9 562 77.0
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 3.1e-243 845.1 562 76.2
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 3.1e-243 845.1 562 76.9
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 3.4e-242 841.6 560 77.7
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 1.9e-240 835.9 562 76.7
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 3.2e-240 835.1 562 77.0
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 9.2e-240 833.6 565 76.1
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 1.2e-239 833.2 562 76.3
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 1.2e-239 833.2 562 75.1
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 3.5e-239 831.6 613 73.1
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 3.3e-237 825.1 562 76.5
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 9.6e-237 823.5 540 77.4
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 1.6e-236 822.8 562 74.6
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 2.8e-236 822.0 542 77.5
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 4.7e-236 821.2 562 75.8
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 3.1e-235 818.5 515 79.6
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 6.8e-235 817.4 562 75.1
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 6.8e-235 817.4 562 75.1
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 3.4e-234 815.1 566 75.3
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 1.3e-233 813.1 562 75.4
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 6.4e-233 810.8 565 74.5
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.2e-231 806.6 557 74.5
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 2.1e-231 805.8 562 73.3
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 8.7e-230 800.4 560 74.1
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 8.4e-225 783.9 546 74.7
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 1.1e-224 783.5 562 71.7
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 7.1e-224 780.8 544 74.6
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 1.3e-222 776.5 562 70.8
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 2.3e-222 775.8 649 64.6
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 6.6e-222 774.2 515 76.9
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 1.1e-221 773.5 563 70.2
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 5.6e-221 771.2 513 75.8
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 8.1e-220 767.3 562 71.4
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 1.4e-219 766.5 562 71.0
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 3.1e-219 765.4 562 69.9
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 1.3e-217 760.0 562 70.1
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 1.4e-216 756.5 562 69.6
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 4.2e-216 755.0 562 69.6
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 4.2e-216 755.0 562 69.0
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 4.6e-215 751.5 563 69.3
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 4.6e-215 751.5 563 69.3
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 6.7e-214 747.7 577 67.8
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 8.7e-214 747.3 513 74.7
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.9e-213 746.1 533 72.0
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 3.3e-213 745.3 533 72.0
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 9.6e-213 743.8 562 68.9
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 2.4e-211 739.2 563 68.7
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.4e-211 739.2 562 68.7
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 2.6e-210 735.7 562 69.4
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 5.5e-208 728.0 595 67.9
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 2.4e-203 712.6 476 76.9
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.1e-187 657.5 393 84.7
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 3.9e-182 642.1 455 71.4
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 4.4e-173 612.1 563 57.4
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 6.3e-172 608.2 434 69.4
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 7.0e-171 604.7 563 57.5
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 4.7e-167 592.0 555 58.9
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 8.0e-167 591.3 569 55.7
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.9e-161 572.8 339 89.1
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 1.4e-158 563.9 563 54.2
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 5.6e-152 542.0 566 49.8
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 2.4e-147 526.6 382 71.2
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 1.8e-134 483.8 306 82.4
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 3.1e-134 483.0 523 55.4
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 6.6e-129 465.3 341 70.7
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 8.6e-129 464.9 349 68.5
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 3.1e-118 429.9 356 60.7
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 6.9e-102 375.6 198 98.5
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 1.7e-100 370.9 261 70.9
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 1.9e-83 314.3 547 37.5
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 3.1e-78 297.0 208 76.0
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 4.7e-66 256.5 200 70.0
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 5.7e-64 249.6 141 83.7
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.1e-58 231.1 174 62.6
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.4e-54 218.4 130 81.5
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 5.0e-44 183.3 161 62.7
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 9.5e-35 152.5 180 49.4
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 4.0e-33 147.1 178 48.3
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 1.2e-32 145.6 157 53.5
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 1.2e-32 145.6 157 53.5
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 9.8e-32 142.5 90 72.2
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.7e-29 134.4 101 69.3
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 3.3e-27 127.5 167 47.3
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.4e-25 122.1 131 55.0
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 7.5e-24 116.3 77 71.4
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 9.2e-22 109.4 58 89.7
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.2e-21 109.0 130 50.0
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 1.2e-16 92.4 87 59.8
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.9e-14 85.1 90 52.2
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 9.2e-14 82.8 81 55.6
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 2.6e-08 64.7 162 23.5
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 1.9e-06 58.5 160 23.1
SEGI_03047 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.9e-06 58.5 47 68.1
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 2.4e-06 58.2 162 23.5
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 2.4e-06 58.2 176 23.3
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 4.1e-06 57.4 160 23.1
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 5.4e-06 57.0 161 23.6
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 9.2e-06 56.2 200 23.0
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 9.2e-06 56.2 47 53.2


User provided reference genes

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