Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 4.2e-144 514.6 248 100.0
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 1.5e-141 506.1 248 98.8
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 2.2e-137 492.3 248 95.2
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 1.8e-115 419.5 249 80.7
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 1.4e-107 393.3 249 77.1
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 1.4e-99 366.7 256 69.1
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 2.5e-80 302.8 244 63.1
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 5.6e-80 301.6 250 59.6
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.6e-79 300.1 245 60.0
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 1.6e-79 300.1 252 60.3
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 3.1e-78 295.8 245 60.0
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 5.8e-77 291.6 242 59.1
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 1.3e-76 290.4 253 58.5
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 4.1e-75 285.4 254 55.1
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 2.1e-74 283.1 251 55.8
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 3.5e-74 282.3 262 53.8
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 1.3e-73 280.4 230 61.7
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 2.3e-73 279.6 248 57.3
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 3.9e-73 278.9 253 55.7
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 4.3e-72 275.4 246 56.9
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 1.4e-70 270.4 254 54.7
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 3.4e-69 265.8 228 57.0
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 7.5e-69 264.6 253 51.8
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 2.9e-68 262.7 236 55.9
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 6.4e-68 261.5 237 56.5
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 1.4e-67 260.4 242 51.2
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 2.4e-67 259.6 244 52.9
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.4e-67 259.6 235 54.5
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 3.2e-67 259.2 256 50.4
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 9.2e-67 257.7 229 56.3
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 9.2e-67 257.7 245 53.1
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.7e-66 256.1 235 54.5
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 4.6e-66 255.4 247 52.2
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 6.0e-66 255.0 234 54.3
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 6.0e-66 255.0 238 55.9
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.3e-65 253.8 247 50.2
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 1.3e-65 253.8 252 50.4
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 8.6e-65 251.1 236 53.8
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 1.1e-64 250.8 230 53.5
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 1.2e-63 247.3 244 52.0
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 1.1e-62 244.2 244 49.6
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 1.8e-62 243.4 245 51.8
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 6.8e-62 241.5 245 49.8
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.2e-61 240.7 240 51.2
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 9.9e-61 237.7 240 49.6
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 2.2e-60 236.5 237 53.2
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 4.9e-60 235.3 240 51.2
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 6.4e-60 235.0 246 52.4
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 2.4e-59 233.0 241 48.5
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 3.2e-59 232.6 259 45.9
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 3.2e-59 232.6 241 49.4
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 3.2e-59 232.6 220 53.6
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 4.2e-59 232.3 244 49.2
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 1.2e-58 230.7 241 48.1
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 2.7e-58 229.6 241 47.3
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 3.5e-58 229.2 246 48.0
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 1.7e-57 226.9 252 46.8
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 1.1e-56 224.2 235 48.1
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 1.1e-56 224.2 231 47.6
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 3.3e-56 222.6 234 46.6
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 1.2e-55 220.7 244 47.1
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 4.7e-55 218.8 247 48.2
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 4.7e-55 218.8 232 47.4
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 6.2e-55 218.4 234 45.7
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 3.1e-54 216.1 237 45.6
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 3.1e-54 216.1 248 43.5
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.0e-54 215.7 229 48.9
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 5.3e-54 215.3 252 46.4
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 6.9e-54 214.9 249 47.0
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.5e-53 213.8 248 43.5
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 2.0e-53 213.4 241 47.3
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 3.4e-53 212.6 241 44.8
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 5.8e-53 211.8 247 47.0
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 9.9e-53 211.1 246 46.7
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 9.9e-53 211.1 246 46.7
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 9.9e-53 211.1 244 45.1
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.9e-52 208.8 229 48.5
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 6.4e-52 208.4 246 46.3
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 6.4e-52 208.4 246 46.3
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 8.4e-52 208.0 243 46.5
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 1.4e-51 207.2 161 64.0
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 9.3e-51 204.5 229 48.0
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 1.2e-50 204.1 221 47.1
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 4.6e-50 202.2 227 48.0
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 6.0e-50 201.8 247 44.1
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 7.8e-50 201.4 244 45.9
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.5e-48 196.4 239 46.4
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 3.3e-48 196.1 184 50.0
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 1.6e-47 193.7 190 51.6
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 9.0e-46 188.0 240 41.7
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 1.1e-43 181.0 228 44.3
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 3.2e-43 179.5 298 35.6
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.7e-42 176.4 240 42.1
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 3.5e-42 176.0 167 55.1
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 6.0e-42 175.3 222 47.7
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 2.5e-40 169.9 225 39.6
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 1.6e-39 167.2 175 50.3
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 6.2e-39 165.2 296 33.8
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.5e-37 160.6 160 46.9
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 5.8e-37 158.7 231 41.6
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 1.3e-36 157.5 247 38.1
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 3.8e-36 156.0 267 33.0
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 4.6e-34 149.1 230 34.8
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 2.3e-33 146.7 165 48.5
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 5.6e-32 142.1 165 47.3
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 5.8e-29 132.1 165 43.6
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 1.0e-28 131.3 92 67.4
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 4.8e-23 112.5 163 42.9
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 5.3e-22 109.0 165 34.5
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 5.3e-22 109.0 87 58.6
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 9.0e-22 108.2 161 37.9
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 8.5e-20 101.7 99 50.5
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 1.6e-18 97.4 99 51.5
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 3.6e-18 96.3 87 54.0
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 3.0e-17 93.2 110 43.6
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.1e-16 91.3 84 48.8
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 1.5e-16 90.9 146 39.0
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 2.2e-15 87.0 70 58.6
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 8.2e-15 85.1 64 59.4
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 2.4e-14 83.6 79 48.1
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 3.8e-12 76.3 108 44.4
SalBow1G6319 Salvia bowleyana HOM05D006775 ORTHO05D008344 1.1e-06 58.2 57 54.4


User provided reference genes

Program Settings