Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.3e-74 283.1 156 100.0
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 4.3e-70 268.1 157 94.9
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 6.2e-61 237.7 154 84.4
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 3.3e-54 215.3 154 72.1
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 2.0e-51 206.1 154 71.4
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.1e-45 186.0 157 63.7
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.4e-42 174.1 153 58.8
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.1e-39 164.9 154 58.4
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 1.9e-38 162.9 154 59.1
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 8.2e-37 157.5 146 56.8
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 7.7e-35 151.0 145 57.2
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 1.3e-34 150.2 152 57.9
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.7e-34 149.8 159 50.9
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 2.9e-34 149.1 151 53.0
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 3.8e-34 148.7 155 52.9
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.8e-34 148.7 159 50.3
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 8.5e-34 147.5 160 51.2
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.4e-33 146.7 156 53.2
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 3.2e-33 145.6 159 49.7
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.5e-33 144.8 154 53.2
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 7.2e-33 144.4 153 52.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 2.7e-32 142.5 156 53.2
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.7e-32 142.5 150 53.3
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.7e-32 142.5 150 53.3
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.7e-32 142.5 149 53.7
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.7e-32 142.5 143 57.3
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.6e-32 142.1 159 48.4
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 6.1e-32 141.4 150 53.3
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 6.1e-32 141.4 153 51.6
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.0e-31 140.6 154 51.9
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.4e-31 140.2 147 55.1
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.4e-31 140.2 143 55.9
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.4e-31 140.2 157 52.9
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.4e-31 140.2 159 50.9
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.3e-31 139.4 153 52.3
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 3.0e-31 139.0 155 50.3
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.0e-31 139.0 157 45.2
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 3.0e-31 139.0 152 57.2
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 3.9e-31 138.7 152 51.3
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 3.9e-31 138.7 153 51.0
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 5.1e-31 138.3 152 52.6
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 5.1e-31 138.3 151 53.0
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 5.1e-31 138.3 152 51.3
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 3.3e-30 135.6 151 52.3
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.3e-30 135.2 149 55.0
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 5.7e-30 134.8 157 49.7
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 9.7e-30 134.0 154 49.4
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 9.7e-30 134.0 149 51.7
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.3e-29 133.7 152 50.0
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.7e-29 133.3 151 50.3
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.2e-29 132.9 149 51.7
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 2.8e-29 132.5 184 46.7
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 2.8e-29 132.5 158 50.6
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 4.8e-29 131.7 152 53.3
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 4.8e-29 131.7 156 51.3
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.1e-28 130.6 152 53.3
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.4e-28 130.2 154 49.4
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.8e-28 129.8 154 46.8
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.1e-28 129.0 160 50.6
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 4.1e-28 128.6 149 45.6
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 4.1e-28 128.6 146 51.4
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 9.1e-28 127.5 166 48.8
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-27 127.1 140 55.0
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.5e-27 126.7 177 45.2
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-27 126.3 149 48.3
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-27 126.3 149 48.3
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.6e-27 125.9 155 45.2
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.4e-27 125.6 140 55.0
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 1.0e-26 124.0 149 49.7
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 1.7e-26 123.2 152 52.0
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 3.8e-26 122.1 164 46.3
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 3.8e-26 122.1 154 46.1
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-25 119.8 130 54.6
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.2e-25 117.9 119 55.5
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 9.4e-25 117.5 154 44.8
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 1.2e-24 117.1 152 47.4
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 2.1e-24 116.3 161 44.1
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 2.7e-24 115.9 161 44.1
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 4.7e-24 115.2 156 45.5
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 6.1e-24 114.8 155 42.6
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.0e-23 112.5 132 53.8
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 6.7e-23 111.3 145 49.0
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.6e-22 109.4 158 46.8
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.3e-22 109.0 132 48.5
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 3.3e-22 109.0 156 48.1
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 4.4e-22 108.6 146 47.9
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.3e-21 107.1 163 41.7
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.3e-21 107.1 162 46.3
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.7e-21 106.7 146 47.3
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.2e-21 106.3 149 49.7
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.2e-21 106.3 151 44.4
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 3.7e-21 105.5 175 40.6
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.7e-21 105.5 116 46.6
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 1.1e-20 104.0 155 41.3
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.1e-20 104.0 153 43.8
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-20 104.0 156 46.8
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.4e-20 103.6 147 47.6
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.4e-20 103.6 116 45.7
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-20 103.6 162 45.7
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.4e-20 103.6 149 43.6
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 3.1e-20 102.4 147 46.3
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 3.1e-20 102.4 154 42.2
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 4.1e-20 102.1 161 42.9
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.3e-20 101.7 145 44.8
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.2e-19 100.5 133 40.6
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 2.0e-19 99.8 167 38.9
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 2.0e-19 99.8 167 38.9
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.6e-19 99.4 161 43.5
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 3.5e-19 99.0 151 44.4
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 4.5e-19 98.6 151 41.7
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 5.9e-19 98.2 116 44.0
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 7.7e-19 97.8 162 43.8
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 1.3e-18 97.1 152 39.5
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 1.3e-18 97.1 161 43.5
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 1.7e-18 96.7 151 43.0
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.7e-18 96.7 154 42.9
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.2e-18 96.3 151 42.4
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.4e-17 93.6 146 44.5
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.9e-17 93.2 145 42.1
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 2.5e-17 92.8 150 39.3
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 3.2e-17 92.4 152 40.1
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 9.4e-17 90.9 167 37.1
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 9.4e-17 90.9 167 37.1
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 9.4e-17 90.9 142 45.8
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-16 90.5 99 54.5
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-16 90.1 136 44.9
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-16 90.1 142 45.1
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.1e-16 89.7 121 45.5
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.1e-16 89.7 149 40.3
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 2.1e-16 89.7 152 40.1
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 3.6e-16 89.0 151 41.7
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 4.7e-16 88.6 168 36.9
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 4.7e-16 88.6 142 45.1
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.7e-16 88.6 89 56.2
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 6.1e-16 88.2 147 38.8
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 6.1e-16 88.2 142 44.4
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 6.1e-16 88.2 142 44.4
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 8.0e-16 87.8 142 45.1
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 1.4e-15 87.0 139 38.8
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-15 86.7 142 45.1
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-15 86.7 142 45.1
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.0e-15 85.9 146 39.0
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.9e-15 85.5 146 39.0
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.7e-15 84.7 158 36.7
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 6.7e-15 84.7 142 44.4
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 8.8e-15 84.3 151 41.1
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 8.8e-15 84.3 148 39.2
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 8.8e-15 84.3 142 44.4
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 1.1e-14 84.0 133 42.9
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.0e-14 83.2 136 41.9
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 2.6e-14 82.8 123 40.7
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 3.3e-14 82.4 126 38.9
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 5.7e-14 81.6 163 40.5
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.3e-13 80.5 106 46.2
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 2.8e-13 79.3 146 38.4
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 4.8e-13 78.6 126 40.5
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 8.2e-13 77.8 141 39.0
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.4e-12 77.0 158 38.6
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 4.1e-12 75.5 159 42.1
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 9.1e-12 74.3 120 46.7
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 1.6e-11 73.6 166 33.7
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 2.6e-11 72.8 160 32.5
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 4.5e-11 72.0 175 32.6
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.9e-11 71.6 128 43.0
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 7.7e-11 71.2 129 38.8
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 1.0e-10 70.9 186 32.3
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.7e-10 70.1 156 37.2
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 2.2e-10 69.7 95 45.3
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.9e-10 69.3 110 37.3
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 3.8e-10 68.9 167 37.1
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.9e-09 66.6 137 35.0
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 3.2e-09 65.9 114 39.5
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 5.5e-09 65.1 98 42.9
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 7.2e-09 64.7 138 37.0
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 9.4e-09 64.3 152 36.8
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 9.4e-09 64.3 188 30.9
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 4.7e-08 62.0 190 30.0
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 4.7e-08 62.0 141 37.6
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 8.0e-08 61.2 152 32.9
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.0e-07 60.8 135 37.0
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 8.8e-07 57.8 155 32.3
ECA234G0512 Erigeron canadensis HOM05D023078 ORTHO05D003943 8.8e-07 57.8 152 38.8
ECA234G0883 Erigeron canadensis HOM05D023078 ORTHO05D003943 8.8e-07 57.8 152 38.8
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 1.5e-06 57.0 154 27.3
BcaB04g18929 Brassica carinata HOM05D021100 ORTHO05D021772 7.5e-06 54.7 118 34.7


User provided reference genes

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