Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.2e-141 506.5 260 100.0
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 1.6e-138 496.1 260 97.7
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 8.9e-137 490.3 260 96.9
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 1.7e-124 449.5 261 90.0
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.7e-117 425.6 264 86.0
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.7e-116 422.9 264 85.2
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 7.3e-107 391.0 260 79.6
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 5.8e-88 328.2 261 65.9
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 9.3e-86 320.9 262 67.2
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 2.7e-85 319.3 269 64.3
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 1.5e-83 313.5 266 63.2
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 7.4e-83 311.2 265 61.5
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.8e-81 306.6 269 60.2
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 1.5e-80 303.5 263 61.6
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 4.5e-80 302.0 268 59.0
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 5.8e-80 301.6 263 61.6
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 1.0e-79 300.8 270 60.4
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 1.3e-79 300.4 267 59.9
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 6.5e-79 298.1 261 61.7
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 1.9e-78 296.6 246 63.0
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.2e-78 295.8 267 59.6
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 7.1e-78 294.7 262 59.5
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 9.3e-78 294.3 264 59.1
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 2.1e-77 293.1 239 64.0
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 2.7e-77 292.7 266 59.0
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 4.6e-77 292.0 253 62.1
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 1.8e-76 290.0 247 61.9
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 3.0e-76 289.3 239 61.1
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 3.0e-76 289.3 262 59.5
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 8.7e-76 287.7 260 60.0
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 1.1e-75 287.3 268 58.2
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 1.9e-75 286.6 268 58.2
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 2.5e-75 286.2 269 59.1
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 2.5e-75 286.2 269 60.2
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 4.3e-75 285.4 237 63.3
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 4.3e-75 285.4 246 63.8
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 5.7e-75 285.0 271 58.3
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 7.4e-75 284.6 268 59.7
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 9.7e-75 284.3 262 57.6
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 2.1e-74 283.1 250 59.6
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.8e-74 282.7 274 57.3
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.8e-74 282.7 274 57.3
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 3.7e-74 282.3 247 61.1
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 3.7e-74 282.3 247 60.3
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 8.2e-74 281.2 238 61.3
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 1.1e-73 280.8 269 58.4
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.4e-73 279.6 269 56.9
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 4.1e-73 278.9 270 56.7
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 6.9e-73 278.1 264 58.0
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 6.9e-73 278.1 241 59.8
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 9.0e-73 277.7 234 65.4
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 1.5e-72 276.9 240 59.6
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.0e-72 276.6 243 58.8
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 3.4e-72 275.8 239 59.4
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 3.4e-72 275.8 239 59.4
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 4.5e-72 275.4 247 59.5
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 7.6e-72 274.6 244 58.6
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.0e-71 274.2 259 57.9
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 1.0e-71 274.2 268 56.0
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 1.0e-71 274.2 246 59.3
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 2.2e-71 273.1 242 58.7
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 3.8e-71 272.3 246 58.9
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 3.8e-71 272.3 244 59.4
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 5.0e-71 271.9 247 59.1
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 8.5e-71 271.2 236 60.2
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 8.5e-71 271.2 246 58.9
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.9e-70 270.0 247 58.3
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.9e-70 270.0 238 58.8
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.9e-70 270.0 238 58.8
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 3.2e-70 269.2 240 60.0
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 4.2e-70 268.9 262 57.3
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 7.2e-70 268.1 270 56.3
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.2e-69 267.3 240 60.0
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 2.1e-69 266.5 226 60.2
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 2.1e-69 266.5 263 55.5
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 6.1e-69 265.0 273 55.3
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 3.0e-68 262.7 241 59.3
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 5.1e-68 261.9 225 60.4
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 3.3e-67 259.2 259 53.3
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 4.3e-67 258.8 259 55.6
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 7.4e-67 258.1 239 56.1
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 9.7e-67 257.7 246 57.3
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 1.3e-66 257.3 227 60.4
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 1.3e-66 257.3 235 57.9
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 1.7e-66 256.9 235 58.7
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 2.2e-66 256.5 240 57.9
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 2.8e-66 256.1 259 54.4
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 3.7e-66 255.8 246 56.9
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 3.7e-66 255.8 246 56.9
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 4.8e-66 255.4 259 54.1
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 1.1e-65 254.2 246 56.5
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 1.1e-65 254.2 240 58.8
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 1.4e-65 253.8 246 56.5
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 6.9e-65 251.5 235 56.6
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 1.5e-64 250.4 229 57.6
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.0e-64 250.0 239 56.1
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 2.6e-64 249.6 259 53.3
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 2.6e-64 249.6 249 56.2
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 4.5e-64 248.8 249 55.8
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 1.3e-63 247.3 249 55.8
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 2.2e-63 246.5 268 55.2
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 3.8e-63 245.7 238 58.4
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 1.4e-62 243.8 237 56.5
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.4e-60 237.3 202 62.9
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 3.9e-60 235.7 250 52.0
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 8.8e-60 234.6 263 53.6
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 3.3e-59 232.6 251 54.2
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.2e-58 229.9 265 55.5
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 3.1e-57 226.1 243 53.9
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 5.3e-57 225.3 272 53.3
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 1.5e-56 223.8 211 60.2
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.0e-56 223.4 211 59.7
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.7e-55 220.3 270 51.1
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 2.9e-55 219.5 218 54.1
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.9e-54 216.9 227 52.9
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 9.4e-54 214.5 208 53.8
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 2.1e-53 213.4 208 56.2
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 1.4e-49 200.7 257 47.9
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.8e-47 192.6 232 47.8
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 3.8e-47 192.6 185 56.2
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.8e-44 183.7 154 57.1
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 1.3e-42 177.6 244 44.3
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 6.5e-39 165.2 217 45.2
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.0e-36 157.9 155 63.2
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.0e-35 153.7 121 57.9
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 5.7e-35 152.1 134 61.2
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.1e-33 147.9 169 48.5
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 9.1e-33 144.8 228 35.5
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 5.9e-32 142.1 140 55.0
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 6.5e-31 138.7 226 35.4
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 1.5e-30 137.5 231 39.0
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 9.5e-30 134.8 209 40.2
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 4.0e-28 129.4 233 37.8
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.2e-27 127.9 140 48.6
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.0e-27 127.1 226 32.7
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 1.1e-25 121.3 216 36.6
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 7.3e-14 82.0 70 55.7
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.4e-11 73.2 71 62.0
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 7.5e-11 72.0 88 50.0
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 7.5e-11 72.0 88 50.0
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.7e-08 63.5 164 30.5
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 1.9e-06 57.4 79 36.7
arahy.Tifrunner.gnm1.ann1.I4LEPW Arachis hypogaea HOM05D005143 ORTHO05D019760 9.5e-06 55.1 50 64.0


User provided reference genes

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