Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 4.8e-188 661.0 328 100.0
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.6e-58 229.2 123 88.6
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 3.3e-48 196.4 141 68.8
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 7.2e-43 178.7 150 61.3
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.3e-41 173.7 159 59.7
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.3e-41 173.7 159 59.7
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 9.7e-40 168.3 162 56.8
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 9.7e-40 168.3 162 56.8
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.8e-39 166.8 135 63.0
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 7.0e-38 162.2 96 82.3
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 7.7e-37 158.7 134 61.2
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 3.8e-36 156.4 145 56.6
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 1.8e-30 137.5 142 51.4
Sopen01g030730 Solanum pennellii HOM05D009260 ORTHO05D010865 2.2e-28 130.6 69 91.3
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 4.7e-26 122.9 125 49.6
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 1.4e-25 121.3 122 45.9
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 5.2e-25 119.4 136 44.9
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 8.8e-25 118.6 123 49.6
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 1.2e-24 118.2 121 52.9
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.2e-24 118.2 127 48.0
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 1.5e-24 117.9 125 46.4
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.5e-24 117.9 125 46.4
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.5e-24 117.9 93 64.5
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 2.6e-24 117.1 120 47.5
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 2.6e-24 117.1 133 43.6
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 4.4e-24 116.3 92 62.0
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 4.4e-24 116.3 122 45.9
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 7.5e-24 115.5 135 45.2
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 1.3e-23 114.8 140 43.6
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 1.7e-23 114.4 134 43.3
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 2.2e-23 114.0 140 43.6
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 2.8e-23 113.6 132 44.7
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 2.8e-23 113.6 135 42.2
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 2.8e-23 113.6 135 44.4
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.7e-23 113.2 127 45.7
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 3.7e-23 113.2 134 43.3
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 8.3e-23 112.1 118 53.4
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 8.3e-23 112.1 136 43.4
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 8.3e-23 112.1 127 45.7
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 1.1e-22 111.7 127 45.7
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.1e-22 111.7 127 45.7
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.4e-22 111.3 114 50.0
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 1.8e-22 110.9 151 39.1
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 2.4e-22 110.5 132 44.7
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 2.4e-22 110.5 116 49.1
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.4e-22 110.5 143 44.1
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 9.2e-22 108.6 117 47.9
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 1.6e-21 107.8 152 39.5
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 2.0e-21 107.5 123 47.2
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 2.0e-21 107.5 112 47.3
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 2.7e-21 107.1 137 43.1
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 2.7e-21 107.1 119 47.9
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.5e-21 106.7 137 43.1
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 4.5e-21 106.3 119 41.2
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 4.5e-21 106.3 119 41.2
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 1.0e-20 105.1 133 41.4
Peaxi162Scf00328g00059 Petunia axillaris HOM05D009260 ORTHO05D010865 1.7e-20 104.4 67 70.1
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 5.0e-20 102.8 119 45.4
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 6.6e-20 102.4 146 42.5
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 6.6e-20 102.4 125 44.0
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 8.6e-20 102.1 127 44.9
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 8.6e-20 102.1 133 41.4
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 1.1e-19 101.7 154 39.0
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 1.5e-19 101.3 119 45.4
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 4.3e-19 99.8 119 44.5
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 7.3e-19 99.0 114 44.7
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 9.5e-19 98.6 106 47.2
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 1.6e-18 97.8 119 44.5
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 2.8e-18 97.1 162 40.1
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 6.1e-18 95.9 121 42.1
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 1.0e-17 95.1 113 40.7
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.8e-17 94.4 112 47.3
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 2.3e-17 94.0 117 40.2
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 3.0e-17 93.6 163 33.1
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 5.2e-17 92.8 129 38.0
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.8e-17 92.4 144 40.3
Peaxi162Scf00047g00186 Petunia axillaris HOM05D009260 ORTHO05D010865 6.8e-17 92.4 61 70.5
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 8.9e-17 92.0 132 40.2
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 1.2e-16 91.7 130 41.5
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 1.2e-16 91.7 115 42.6
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 1.5e-16 91.3 118 39.8
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 1.5e-16 91.3 106 42.5
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 2.0e-16 90.9 150 39.3
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 2.0e-16 90.9 159 35.2
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 2.0e-16 90.9 110 38.2
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 2.6e-16 90.5 129 37.2
Peaxi162Scf00328g00525 Petunia axillaris HOM05D009260 ORTHO05D010865 2.6e-16 90.5 63 71.4
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.6e-16 90.5 56 73.2
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.4e-16 90.1 109 42.2
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 4.4e-16 89.7 150 36.0
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 5.7e-16 89.4 112 42.9
Peaxi162Scf00122g01725 Petunia axillaris HOM05D009260 ORTHO05D010865 5.7e-16 89.4 57 73.7
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 7.5e-16 89.0 116 42.2
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 7.5e-16 89.0 138 38.4
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 9.8e-16 88.6 159 35.2
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 9.8e-16 88.6 118 42.4
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.3e-15 88.2 117 40.2
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.7e-15 87.8 112 42.0
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 2.9e-15 87.0 112 42.9
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 2.9e-15 87.0 122 43.4
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 2.9e-15 87.0 139 37.4
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 3.7e-15 86.7 172 35.5
Peaxi162Scf00047g01613 Petunia axillaris HOM05D009260 ORTHO05D010865 3.7e-15 86.7 57 68.4
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 3.7e-15 86.7 117 37.6
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.7e-15 86.7 121 38.8
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 4.9e-15 86.3 121 38.8
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 6.4e-15 85.9 117 37.6
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 8.3e-15 85.5 102 43.1
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.1e-14 85.1 110 42.7
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.1e-14 85.1 119 33.6
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 2.4e-14 84.0 119 41.2
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 2.4e-14 84.0 143 32.9
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 3.2e-14 83.6 118 41.5
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 4.1e-14 83.2 115 39.1
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 4.1e-14 83.2 128 39.8
Peaxi162Scf00328g00526 Petunia axillaris HOM05D009260 ORTHO05D010865 4.1e-14 83.2 58 70.7
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 4.1e-14 83.2 114 41.2
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 5.4e-14 82.8 157 35.0
PGSC0003DMG400010873 Solanum tuberosum HOM05D020553 ORTHO05D022974 5.4e-14 82.8 66 59.1
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 7.0e-14 82.4 149 32.9
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 7.0e-14 82.4 116 37.9
CAN.G964.9 Capsicum annuum HOM05D009260 ORTHO05D010865 9.2e-14 82.0 60 66.7
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 2.7e-13 80.5 97 44.3
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 3.5e-13 80.1 138 37.0
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 4.6e-13 79.7 86 47.7
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 4.6e-13 79.7 124 39.5
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 5.0e-12 76.3 127 39.4
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 1.1e-11 75.1 139 33.1
FvH4_2g16861 Fragaria vesca HOM05D009260 ORTHO05D010865 2.5e-11 73.9 72 52.8
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.3e-11 73.6 112 35.7
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.3e-11 73.6 112 35.7
Actinidia32272 Actinidia chinensis HOM05D009260 ORTHO05D010865 4.3e-11 73.2 61 60.7
FAN24G0763 Fragaria x ananassa HOM05D009260 ORTHO05D010865 5.6e-11 72.8 56 62.5
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 5.6e-11 72.8 85 44.7
FAN27G0098 Fragaria x ananassa HOM05D009260 ORTHO05D010865 9.5e-11 72.0 56 62.5
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 9.5e-11 72.0 113 35.4
Manes.07G063671 Manihot esculenta HOM05D009260 ORTHO05D010865 1.6e-10 71.2 60 58.3
Actinidia05062 Actinidia chinensis HOM05D002698 ORTHO05D010865 2.8e-10 70.5 61 59.0
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 3.6e-10 70.1 108 41.7
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 4.7e-10 69.7 80 42.5
Oeu042507.1 Olea europaea HOM05D009260 ORTHO05D010865 6.2e-10 69.3 51 64.7
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.8e-09 67.8 105 38.1
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 1.8e-09 67.8 87 42.5
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 2.3e-09 67.4 107 38.3
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.2e-09 66.2 91 42.9
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 8.9e-09 65.5 125 36.0
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 1.5e-08 64.7 115 32.2
COL.COLO4_13821 Corchorus olitorius HOM05D009260 ORTHO05D010865 3.4e-08 63.5 53 56.6
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 3.4e-08 63.5 125 32.8
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.8e-08 62.8 94 38.3
SGA_v2.0_scaffold6G03184 Striga asiatica HOM05D009260 ORTHO05D010865 5.8e-08 62.8 57 57.9
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 7.5e-08 62.4 119 33.6
Eucgr.J02069 Eucalyptus grandis HOM05D009260 ORTHO05D010865 1.3e-07 61.6 61 55.7
FAN24G1436 Fragaria x ananassa HOM05D020052 ORTHO05D010865 1.3e-07 61.6 67 44.8
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 1.3e-07 61.6 87 37.9
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.9e-07 60.5 66 47.0
Peaxi162Scf01261g00003 Petunia axillaris HOM05D025278 ORTHO05D010865 2.9e-07 60.5 36 77.8
Peaxi162Scf01261g00004 Petunia axillaris HOM05D025278 ORTHO05D010865 2.9e-07 60.5 36 77.8
Peaxi162Scf01310g00034 Petunia axillaris HOM05D025278 ORTHO05D010865 2.9e-07 60.5 36 77.8
arahy.Tifrunner.gnm1.ann1.335W22 Arachis hypogaea HOM05D000395 ORTHO05D000088 3.7e-07 60.1 108 39.8
Peaxi162Scf00003g04623 Petunia axillaris HOM05D025278 ORTHO05D010865 3.7e-07 60.1 31 83.9
arahy.Tifrunner.gnm1.ann1.KVNU80 Arachis hypogaea HOM05D000395 ORTHO05D000088 4.9e-07 59.7 108 39.8
Aqoxy3G01422 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 8.3e-07 58.9 100 39.0
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 1.1e-06 58.5 114 32.5
Prupe.5G153300 Prunus persica HOM05D009260 ORTHO05D010865 1.4e-06 58.2 54 55.6
FAN27G0071 Fragaria x ananassa HOM05D009260 ORTHO05D010865 1.9e-06 57.8 70 45.7
Gorai.007G057200 Gossypium raimondii HOM05D009260 ORTHO05D010865 1.9e-06 57.8 57 52.6
Peaxi162Scf00016g01343 Petunia axillaris HOM05D000823 ORTHO05D000088 5.4e-06 56.2 115 33.0
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 7.0e-06 55.8 100 30.0


User provided reference genes

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