Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 0.0e+00 1337.4 665 100.0
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 0.0e+00 1323.9 665 98.6
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 0.0e+00 1257.7 661 95.3
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 0.0e+00 1149.0 665 86.2
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 0.0e+00 1096.3 664 83.1
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 2.2e-309 1065.1 663 80.4
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 8.9e-266 920.2 670 68.1
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 6.2e-259 897.5 640 69.2
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 8.9e-258 893.6 646 69.7
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 7.3e-252 874.0 666 64.9
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.8e-250 869.4 616 70.0
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 3.1e-250 868.6 672 65.2
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.4e-247 859.0 523 84.5
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 5.4e-247 857.8 662 64.4
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 6.0e-246 854.4 640 66.4
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 5.2e-242 841.3 654 62.8
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 1.5e-241 839.7 673 63.3
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 2.0e-241 839.3 675 63.1
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 2.0e-241 839.3 656 64.0
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.7e-240 836.3 674 62.9
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 2.2e-240 835.9 653 63.1
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 3.8e-240 835.1 664 63.4
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 1.4e-239 833.2 664 63.6
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 1.9e-239 832.8 654 64.8
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 9.2e-239 830.5 672 60.9
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 1.6e-238 829.7 669 62.9
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 5.1e-237 824.7 643 63.1
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 5.1e-237 824.7 679 62.3
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 6.6e-237 824.3 639 65.9
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 1.5e-236 823.2 666 62.3
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 1.1e-234 817.0 668 63.3
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 5.2e-234 814.7 665 60.5
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 5.2e-234 814.7 662 61.6
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 1.2e-233 813.5 669 61.6
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 2.6e-233 812.4 647 63.8
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 5.8e-233 811.2 665 61.8
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.4e-231 806.6 665 62.0
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 3.2e-231 805.4 671 58.9
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 1.2e-230 803.5 661 60.4
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.6e-230 801.6 680 59.7
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 6.0e-230 801.2 675 61.0
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 6.0e-230 801.2 666 62.2
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 1.0e-229 800.4 672 61.3
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 1.0e-229 800.4 668 63.0
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.7e-229 799.7 660 61.1
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 6.6e-229 797.7 671 61.5
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 8.7e-229 797.3 669 60.4
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 1.9e-228 796.2 647 62.9
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 8.1e-227 790.8 676 61.1
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.6e-225 785.8 730 55.1
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 2.2e-224 782.7 673 59.4
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 3.0e-221 772.3 659 60.4
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 6.7e-221 771.2 660 58.5
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 1.1e-220 770.4 708 57.9
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 1.1e-220 770.4 655 59.5
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 7.4e-220 767.7 649 59.9
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 1.3e-219 766.9 676 58.9
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 6.2e-219 764.6 668 58.1
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 4.0e-218 761.9 671 58.3
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 1.2e-217 760.4 672 57.4
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 2.2e-216 756.1 652 59.5
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 4.9e-216 755.0 656 58.4
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 9.3e-215 750.7 654 58.9
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 1.8e-213 746.5 654 58.1
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 4.5e-209 731.9 690 57.2
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 1.0e-208 730.7 682 55.1
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.1e-207 727.2 504 72.0
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 4.2e-207 725.3 670 55.2
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 1.8e-205 719.9 668 55.5
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 3.0e-205 719.2 665 55.3
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.3e-203 713.8 680 54.7
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 1.4e-202 710.3 649 57.6
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 2.0e-201 706.4 674 55.5
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 2.6e-201 706.1 675 54.8
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.3e-200 703.7 672 54.5
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 1.1e-199 700.7 665 54.7
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 1.1e-199 700.7 679 54.6
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 1.4e-199 700.3 645 56.3
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 3.2e-199 699.1 664 54.8
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 5.5e-199 698.4 665 54.6
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 2.7e-198 696.0 663 54.4
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 6.1e-198 694.9 663 54.4
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 3.8e-192 675.6 656 54.1
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 2.6e-188 662.9 643 53.7
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 1.3e-187 660.6 501 67.5
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 2.8e-187 659.4 695 53.7
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 6.3e-187 658.3 474 70.0
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 8.5e-184 647.9 652 52.5
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 2.0e-180 636.7 657 53.1
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 4.1e-178 629.0 644 52.6
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 7.5e-164 581.6 507 61.3
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 2.2e-163 580.1 662 47.4
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 7.0e-162 575.1 649 48.8
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 1.4e-149 534.3 527 56.4
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 8.9e-141 505.0 646 44.6
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 6.2e-126 455.7 403 58.8
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 8.1e-118 428.7 646 38.4
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 1.1e-111 408.3 662 37.0
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 1.5e-95 354.8 397 51.1
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 4.5e-92 343.2 237 70.5
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 5.7e-79 299.7 469 39.9
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 6.5e-75 286.2 536 35.8
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 7.0e-61 239.6 471 38.0
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.3e-51 208.8 230 45.2
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.7e-49 201.1 177 52.0
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 4.9e-46 190.3 146 58.9
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.1e-37 162.5 402 31.6
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 8.6e-35 152.9 228 38.6
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.9e-34 151.8 98 74.5
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 1.6e-28 132.1 91 62.6
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 2.3e-27 128.3 84 73.8
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 1.4e-21 109.0 113 46.9
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 7.1e-21 106.7 157 41.4
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 1.7e-19 102.1 92 59.8
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.1e-16 92.8 76 63.2
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 7.1e-13 80.1 76 55.3
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 2.3e-11 75.1 74 55.4
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 2.5e-10 71.6 64 51.6
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 9.6e-10 69.7 92 40.2


User provided reference genes

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