Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g025510 Solanum pennellii HOM05D002585 ORTHO05D002917 5.6e-133 477.6 243 100.0
PGSC0003DMG400019014 Solanum tuberosum HOM05D002585 ORTHO05D002917 7.5e-114 414.1 255 85.1
Solyc01g056430.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.8e-108 395.6 300 71.3
PGSC0003DMG401009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 3.6e-108 395.2 287 74.2
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 3.8e-89 332.0 311 58.5
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 1.6e-87 326.6 243 73.7
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.3e-86 322.8 355 53.0
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 2.2e-81 306.2 291 55.3
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.2e-81 306.2 321 52.3
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 4.9e-81 305.1 310 53.5
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.7e-79 299.3 272 61.4
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.5e-79 298.9 330 51.2
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 4.6e-79 298.5 315 51.7
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.3e-76 290.4 342 49.4
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 5.3e-75 285.0 312 51.3
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.0e-70 270.8 313 47.9
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.8e-70 270.0 273 52.4
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 3.9e-70 268.9 313 46.3
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 3.9e-70 268.9 320 47.2
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 2.5e-69 266.2 326 45.1
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 7.4e-69 264.6 324 46.0
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 9.7e-69 264.2 312 47.4
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 1.6e-68 263.5 319 46.4
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 2.8e-68 262.7 323 45.5
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 4.8e-68 261.9 323 46.4
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 6.3e-68 261.5 323 45.2
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 8.2e-68 261.2 248 54.8
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 8.2e-68 261.2 324 44.4
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 8.2e-68 261.2 323 44.6
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 1.1e-67 260.8 323 45.8
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 1.4e-67 260.4 330 44.5
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 1.8e-67 260.0 323 44.6
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 2.4e-67 259.6 325 45.5
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 2.4e-67 259.6 312 47.4
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 3.1e-67 259.2 324 44.8
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 3.1e-67 259.2 295 48.1
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 5.3e-67 258.5 281 52.0
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 6.9e-67 258.1 303 47.5
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 6.9e-67 258.1 323 44.3
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 9.0e-67 257.7 299 47.2
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 9.0e-67 257.7 299 47.2
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 9.0e-67 257.7 299 47.2
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 2.0e-66 256.5 306 46.4
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 5.9e-66 255.0 334 44.6
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 1.0e-65 254.2 323 44.3
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 1.3e-65 253.8 316 45.6
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 1.3e-65 253.8 316 45.6
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 1.3e-65 253.8 316 45.6
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 1.3e-65 253.8 316 45.6
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 1.3e-65 253.8 323 43.3
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 1.7e-65 253.4 324 44.4
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 1.7e-65 253.4 350 42.3
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 1.7e-65 253.4 360 41.9
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 1.7e-65 253.4 321 44.5
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 2.2e-65 253.1 323 44.6
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 2.9e-65 252.7 323 44.3
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 2.9e-65 252.7 323 44.0
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 2.9e-65 252.7 329 45.3
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 3.8e-65 252.3 319 43.3
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 5.0e-65 251.9 298 47.0
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 6.5e-65 251.5 323 44.0
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 8.5e-65 251.1 323 44.3
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 1.9e-64 250.0 323 44.0
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 3.2e-64 249.2 334 42.5
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 3.2e-64 249.2 306 44.4
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 3.2e-64 249.2 324 44.1
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 4.2e-64 248.8 324 43.5
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 7.2e-64 248.1 323 44.0
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 7.2e-64 248.1 323 43.0
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.6e-63 246.9 323 43.7
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 2.7e-63 246.1 333 42.9
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 3.6e-63 245.7 284 49.6
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 3.6e-63 245.7 323 42.4
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.6e-63 245.4 323 43.7
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 4.6e-63 245.4 323 43.7
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 6.1e-63 245.0 313 43.8
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 1.0e-62 244.2 315 43.5
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 1.0e-62 244.2 323 42.4
VMungo0720G0437 Vigna mungo HOM05D002585 ORTHO05D002917 1.0e-62 244.2 348 41.1
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 1.4e-62 243.8 326 42.9
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 1.8e-62 243.4 323 42.7
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 1.8e-62 243.4 323 42.7
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 2.3e-62 243.0 350 40.9
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 2.3e-62 243.0 330 41.8
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 3.0e-62 242.7 323 44.0
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 3.9e-62 242.3 326 42.3
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 3.9e-62 242.3 324 42.3
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 6.7e-62 241.5 323 43.0
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 2.0e-61 240.0 323 42.7
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 2.5e-61 239.6 324 42.6
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 2.5e-61 239.6 304 44.7
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 3.3e-61 239.2 315 42.5
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 3.3e-61 239.2 322 40.1
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 7.4e-61 238.0 318 42.5
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 1.3e-60 237.3 309 43.7
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 1.7e-60 236.9 343 39.9
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 1.7e-60 236.9 323 43.0
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 3.7e-60 235.7 322 39.4
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 8.2e-60 234.6 331 42.3
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 1.8e-59 233.4 324 42.3
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 3.1e-59 232.6 326 41.4
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 4.1e-59 232.3 326 40.2
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 2.0e-58 229.9 312 42.3
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 1.0e-57 227.6 319 38.9
Ca_05180_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 1.7e-57 226.9 323 40.2
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 2.9e-57 226.1 325 41.8
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 8.5e-57 224.6 307 42.7
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 1.9e-56 223.4 322 40.4
Medtr1g062710 Medicago truncatula HOM05D002585 ORTHO05D002917 4.2e-56 222.2 323 41.2
Psat6g074480 Pisum sativum HOM05D002585 ORTHO05D002917 4.2e-56 222.2 323 40.9
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 9.4e-56 221.1 261 47.5
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 9.4e-56 221.1 323 41.2
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 2.1e-55 219.9 323 40.6
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 3.6e-55 219.2 325 39.1
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 6.1e-55 218.4 289 43.9
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 1.0e-54 217.6 323 40.9
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 1.4e-54 217.2 337 38.9
Solyc06g011290.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.0e-54 216.1 339 40.1
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 5.1e-54 215.3 283 43.1
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 6.7e-54 214.9 291 41.9
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 2.0e-53 213.4 330 39.4
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 4.4e-53 212.2 327 37.3
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 4.4e-53 212.2 282 42.6
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 9.7e-53 211.1 323 36.2
Phvul.007G152300 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 3.7e-52 209.1 330 37.9
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.7e-52 209.1 328 36.0
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 6.3e-52 208.4 324 37.7
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.8e-51 206.8 323 35.6
Glyma.10G060100 Glycine max HOM05D002585 ORTHO05D002917 2.4e-51 206.5 332 37.0
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 2.0e-50 203.4 341 36.4
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 3.5e-50 202.6 291 40.5
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.0e-49 201.1 328 34.8
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 1.3e-49 200.7 312 38.8
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 9.4e-48 194.5 320 39.4
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 3.6e-47 192.6 307 39.4
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 8.0e-47 191.4 205 50.7
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 1.0e-46 191.0 324 36.1
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 3.0e-46 189.5 116 79.3
Peaxi162Scf00247g00111 Petunia axillaris HOM05D002585 ORTHO05D002917 3.1e-43 179.5 130 66.9
Nitab4.5_0003945g0160 Nicotiana tabacum HOM05D002585 ORTHO05D002917 7.7e-42 174.9 111 78.4
Nitab4.5_0008230g0010 Nicotiana tabacum HOM05D002585 ORTHO05D002917 7.7e-42 174.9 125 70.4
Peaxi162Scf00780g01013 Petunia axillaris HOM05D002585 ORTHO05D002917 1.7e-41 173.7 149 59.7
Peaxi162Scf00247g00105 Petunia axillaris HOM05D002585 ORTHO05D002917 3.8e-41 172.6 125 68.0
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 5.2e-38 162.2 126 63.5
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 2.6e-37 159.8 126 62.7
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.8e-36 156.4 126 59.5
CBR_g51531 Chara braunii HOM05D002585 ORTHO05D002917 1.4e-35 154.1 275 35.3
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 5.3e-35 152.1 231 38.5
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 7.0e-35 151.8 126 59.5
Nitab4.5_0008230g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 7.0e-35 151.8 161 55.9
Lalb_Chr21g0315141 Lupinus albus HOM05D002585 ORTHO05D002917 1.2e-34 151.0 116 61.2
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 1.6e-34 150.6 107 67.3
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.6e-34 150.6 328 35.1
Solyc01g056390.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.5e-34 149.4 108 76.9
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 7.2e-32 141.7 96 69.8
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 9.4e-32 141.4 116 61.2
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.7e-31 139.8 113 62.8
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 4.7e-31 139.0 179 42.5
Nitab4.5_0003945g0140 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.3e-30 136.7 125 60.8
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 6.8e-30 135.2 99 65.7
RcHm_v2.0_Chr6g0260941 Rosa chinensis HOM05D002585 ORTHO05D002917 1.2e-29 134.4 109 63.3
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 2.0e-29 133.7 209 39.7
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 3.4e-29 132.9 107 62.6
CAN.G541.45 Capsicum annuum HOM05D002585 ORTHO05D002917 7.5e-29 131.7 131 53.4
Lalb_Chr02g0155491 Lupinus albus HOM05D002585 ORTHO05D002917 6.3e-28 128.6 126 50.8
Solyc01g056400.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 5.4e-27 125.6 66 90.9
Lalb_Chr02g0155471 Lupinus albus HOM05D002585 ORTHO05D002917 1.6e-26 124.0 94 61.7
Lalb_Chr21g0315151 Lupinus albus HOM05D002585 ORTHO05D002917 3.5e-26 122.9 125 48.8
HanXRQChr05g0144531 Helianthus annuus HOM05D002585 ORTHO05D002917 4.5e-26 122.5 138 47.1
SHI27837 Sapria himalayana HOM05D002585 ORTHO05D002917 5.9e-26 122.1 82 70.7
unitig_0.g678 Utricularia gibba HOM05D002585 ORTHO05D002917 7.7e-26 121.7 130 47.7
SHI27836 Sapria himalayana HOM05D002585 ORTHO05D002917 1.5e-24 117.5 126 46.8
Glyma.13G146751 Glycine max HOM05D002585 ORTHO05D002917 3.0e-22 109.8 85 62.4
Cfa022823 Carpinus fangiana HOM05D002585 ORTHO05D002917 1.7e-12 77.4 107 36.4
Solyc01g056380.1 Solanum lycopersicum HOM05D002585 ORTHO05D051164 8.3e-12 75.1 41 87.8
Sopen01g019520 Solanum pennellii HOM05D002585 ORTHO05D051164 8.3e-12 75.1 42 81.0


User provided reference genes

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