Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.8e-44 182.2 91 100.0
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 2.9e-34 148.3 83 89.2
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 6.2e-29 130.6 86 77.9
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 6.2e-29 130.6 86 77.9
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 6.2e-29 130.6 86 77.9
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.0e-23 113.2 89 66.3
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.8e-23 112.5 89 66.3
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.5e-22 109.4 82 70.7
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.9e-22 109.0 86 64.0
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 3.3e-22 108.2 78 71.8
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 5.7e-22 107.5 91 63.7
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 7.4e-22 107.1 91 61.5
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.6e-21 105.9 77 67.5
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 6.3e-21 104.0 86 64.0
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 8.2e-21 103.6 85 61.2
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.1e-20 103.2 85 61.2
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.1e-20 103.2 85 61.2
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.1e-20 103.2 86 60.5
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.4e-20 102.8 76 67.1
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 4.1e-20 101.3 82 59.8
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 5.3e-20 100.9 85 58.8
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 5.3e-20 100.9 77 66.2
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.2e-19 99.8 85 60.0
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.2e-19 99.8 85 56.5
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 1.2e-19 99.8 86 57.0
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 2.6e-19 98.6 87 60.9
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 2.6e-19 98.6 79 62.0
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 4.5e-19 97.8 85 57.6
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 7.6e-19 97.1 87 56.3
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 7.6e-19 97.1 87 59.8
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 7.6e-19 97.1 85 57.6
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 1.0e-18 96.7 82 57.3
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.0e-18 96.7 85 56.5
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.0e-18 96.7 77 61.0
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.0e-18 96.7 71 64.8
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.3e-18 96.3 82 56.1
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 1.3e-18 96.3 86 58.1
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.3e-18 96.3 77 62.3
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.7e-18 95.9 82 57.3
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.7e-18 95.9 77 57.1
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.7e-18 95.9 79 58.2
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 2.2e-18 95.5 86 58.1
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 2.2e-18 95.5 86 59.3
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 2.2e-18 95.5 71 64.8
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 2.9e-18 95.1 81 63.0
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 2.9e-18 95.1 81 63.0
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 2.9e-18 95.1 81 63.0
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 2.9e-18 95.1 81 63.0
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 2.9e-18 95.1 83 60.2
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.8e-18 94.7 85 54.1
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.8e-18 94.7 85 54.1
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 5.0e-18 94.4 74 60.8
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 5.0e-18 94.4 74 64.9
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 5.0e-18 94.4 85 52.9
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 6.5e-18 94.0 73 61.6
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 8.5e-18 93.6 87 57.5
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.1e-17 93.2 82 56.1
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.4e-17 92.8 85 55.3
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 1.9e-17 92.4 80 61.2
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 2.5e-17 92.0 88 56.8
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 2.5e-17 92.0 80 61.2
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 2.5e-17 92.0 81 64.2
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 2.5e-17 92.0 81 64.2
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 3.2e-17 91.7 72 59.7
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 4.2e-17 91.3 87 50.6
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 4.2e-17 91.3 79 55.7
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 4.2e-17 91.3 77 57.1
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 5.5e-17 90.9 89 53.9
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 5.5e-17 90.9 76 57.9
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 5.5e-17 90.9 85 52.9
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 5.5e-17 90.9 77 59.7
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 7.2e-17 90.5 77 57.1
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 9.3e-17 90.1 78 61.5
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 1.2e-16 89.7 77 61.0
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 1.2e-16 89.7 71 60.6
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.6e-16 89.4 70 65.7
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.6e-16 89.4 82 54.9
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.6e-16 89.4 82 54.9
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 2.1e-16 89.0 77 62.3
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.7e-16 88.6 66 71.2
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 2.7e-16 88.6 87 56.3
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.6e-16 88.2 82 50.0
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 4.6e-16 87.8 74 60.8
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 7.9e-16 87.0 82 53.7
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 7.9e-16 87.0 64 64.1
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.0e-15 86.7 87 56.3
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-15 86.3 86 51.2
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.4e-15 86.3 62 66.1
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 2.3e-15 85.5 73 56.2
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 3.0e-15 85.1 82 53.7
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.9e-15 84.7 86 50.0
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 6.7e-15 84.0 83 50.6
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 6.7e-15 84.0 87 51.7
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 6.7e-15 84.0 87 51.7
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.7e-15 84.0 87 51.7
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.7e-15 84.0 87 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 8.8e-15 83.6 75 56.0
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 8.8e-15 83.6 63 69.8
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 1.1e-14 83.2 73 56.2
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.1e-14 83.2 87 51.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 1.5e-14 82.8 67 59.7
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.9e-14 82.4 87 51.7
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.5e-14 82.0 86 50.0
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 4.3e-14 81.3 87 51.7
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 4.3e-14 81.3 71 56.3
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.7e-14 80.9 86 48.8
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 7.4e-14 80.5 66 62.1
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.3e-13 79.7 73 53.4
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.3e-13 79.7 52 75.0
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-13 79.7 87 50.6
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-13 79.7 87 50.6
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 1.3e-13 79.7 78 57.7
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 2.2e-13 79.0 49 75.5
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 3.7e-13 78.2 87 49.4
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 8.2e-13 77.0 68 52.9
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 2.0e-11 72.4 60 60.0
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 2.6e-11 72.0 92 47.8
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 7.7e-11 70.5 66 48.5
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.7e-08 62.0 51 58.8


User provided reference genes

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