Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 1.6e-59 232.6 121 100.0
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 5.9e-59 230.7 121 99.2
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 6.5e-58 227.3 121 96.7
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 4.7e-56 221.1 121 94.2
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 8.8e-55 216.9 121 91.7
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 6.3e-53 210.7 114 93.9
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 2.5e-49 198.7 114 87.7
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 2.1e-48 195.7 121 82.6
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 1.2e-46 189.9 104 94.2
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 1.7e-45 186.0 121 78.5
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 1.7e-45 186.0 121 80.2
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 2.2e-45 185.7 119 77.3
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.8e-45 185.3 121 75.2
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 4.8e-45 184.5 119 77.3
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 3.1e-44 181.8 121 77.7
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 4.1e-44 181.4 121 79.3
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 7.0e-44 180.6 121 75.2
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 7.0e-44 180.6 121 75.2
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 5.9e-43 177.6 121 74.4
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 7.7e-43 177.2 121 74.4
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 7.7e-43 177.2 121 72.7
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 7.7e-43 177.2 121 71.9
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 7.7e-43 177.2 121 71.9
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 7.7e-43 177.2 121 72.7
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 2.9e-42 175.3 121 74.4
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.9e-42 175.3 121 73.6
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.9e-42 175.3 121 73.6
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 2.9e-42 175.3 121 72.7
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 3.8e-42 174.9 121 74.4
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 3.8e-42 174.9 121 72.7
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 8.5e-42 173.7 121 72.7
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.1e-41 173.3 121 72.7
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 1.9e-41 172.6 116 75.0
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 2.5e-41 172.2 121 71.1
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 3.2e-41 171.8 121 71.9
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 5.5e-41 171.0 121 71.1
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 9.5e-41 170.2 121 72.7
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 9.5e-41 170.2 121 68.6
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 9.5e-41 170.2 112 75.0
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 1.2e-40 169.9 112 74.1
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 1.6e-40 169.5 121 74.4
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.6e-40 169.5 121 68.6
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 2.1e-40 169.1 121 71.1
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 2.8e-40 168.7 121 73.6
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 2.8e-40 168.7 112 75.0
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 3.6e-40 168.3 121 68.6
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 3.6e-40 168.3 121 71.1
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 4.7e-40 167.9 121 72.7
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 4.7e-40 167.9 121 68.6
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 6.1e-40 167.5 114 71.9
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 6.1e-40 167.5 116 73.3
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 8.0e-40 167.2 121 71.9
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 1.0e-39 166.8 121 71.9
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 1.4e-39 166.4 116 72.4
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 1.8e-39 166.0 121 69.4
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 6.8e-39 164.1 121 66.9
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 6.8e-39 164.1 112 71.4
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 8.8e-39 163.7 101 81.2
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 8.8e-39 163.7 112 71.4
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 1.2e-38 163.3 109 70.6
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 1.5e-38 162.9 114 71.1
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 2.6e-38 162.2 114 71.9
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 3.4e-38 161.8 114 71.1
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 4.4e-38 161.4 146 61.0
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 1.7e-37 159.5 114 71.9
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 1.7e-37 159.5 119 69.7
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 2.2e-37 159.1 114 71.1
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 2.8e-37 158.7 114 72.8
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 3.7e-37 158.3 112 70.5
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 3.7e-37 158.3 121 66.9
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 4.9e-37 157.9 121 70.2
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 4.9e-37 157.9 114 72.8
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 8.3e-37 157.1 104 77.9
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 1.1e-36 156.8 114 71.1
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 1.4e-36 156.4 114 71.9
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 1.8e-36 156.0 114 71.1
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 1.8e-36 156.0 104 76.0
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 3.1e-36 155.2 114 71.1
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 4.1e-36 154.8 114 71.1
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 4.1e-36 154.8 114 71.1
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 4.1e-36 154.8 114 71.1
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 4.1e-36 154.8 114 71.1
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 4.1e-36 154.8 108 71.3
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 4.1e-36 154.8 98 73.5
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 4.1e-36 154.8 121 65.3
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 7.0e-36 154.1 114 71.1
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 7.0e-36 154.1 120 63.3
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 9.2e-36 153.7 112 71.4
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 1.2e-35 153.3 115 69.6
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 1.6e-35 152.9 104 76.0
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 2.7e-35 152.1 121 65.3
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 2.3e-34 149.1 112 71.4
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 2.3e-34 149.1 102 75.5
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 2.9e-34 148.7 111 65.8
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 1.9e-33 146.0 103 66.0
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 2.5e-33 145.6 107 70.1
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 4.3e-33 144.8 89 82.0
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 4.3e-33 144.8 89 83.1
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 5.6e-33 144.4 104 67.3
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 7.3e-33 144.1 103 65.0
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 9.5e-33 143.7 104 70.2
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 1.6e-32 142.9 104 65.4
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 2.1e-32 142.5 104 69.2
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 2.1e-32 142.5 104 64.4
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 2.8e-32 142.1 114 65.8
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 2.8e-32 142.1 91 76.9
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 6.1e-32 141.0 110 66.4
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 1.8e-31 139.4 104 70.2
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 2.3e-31 139.0 105 65.7
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 2.3e-31 139.0 109 66.1
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 3.0e-31 138.7 110 64.5
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 3.0e-31 138.7 104 69.2
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 3.0e-31 138.7 104 69.2
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 4.0e-31 138.3 100 71.0
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 4.0e-31 138.3 107 62.6
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 8.9e-31 137.1 110 57.3
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 3.4e-30 135.2 104 64.4
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 7.5e-30 134.0 101 66.3
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 9.8e-30 133.7 109 60.6
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 1.3e-29 133.3 97 70.1
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.9e-29 132.1 104 62.5
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 3.7e-29 131.7 96 64.6
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 9.2e-28 127.1 126 57.1
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 3.0e-26 122.1 70 90.0
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 1.9e-25 119.4 103 62.1
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 2.5e-25 119.0 101 56.4
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 3.3e-25 118.6 93 63.4
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 6.2e-24 114.4 75 80.0
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 7.5e-22 107.5 95 53.7
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 9.8e-22 107.1 109 54.1
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 7.0e-20 100.9 105 58.1
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.9e-17 92.8 60 75.0
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 8.1e-16 87.4 66 63.6
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 3.4e-14 82.0 110 42.7
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 9.8e-14 80.5 66 62.1
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 1.3e-10 70.1 81 50.6
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.7e-10 69.7 52 61.5
MCO06G009 Micromonas commoda HOM05D005560 ORTHO05D006862 1.2e-08 63.5 106 37.7
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 4.0e-07 58.5 99 32.3


User provided reference genes

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