Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 8.6e-41 169.9 84 100.0
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 2.8e-23 111.7 71 77.5
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 3.6e-23 111.3 69 76.8
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 4.0e-22 107.8 71 73.2
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 5.2e-22 107.5 71 73.2
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 6.8e-22 107.1 70 72.9
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 8.9e-22 106.7 78 69.2
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 2.7e-18 95.1 72 66.7
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 3.5e-18 94.7 65 70.8
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 7.8e-18 93.6 60 73.3
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.0e-17 93.2 59 74.6
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.3e-17 92.8 60 70.0
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.1e-16 89.7 98 51.0
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.6e-15 85.9 90 52.2
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.4e-14 82.8 76 57.9
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 6.8e-14 80.5 60 68.3
MELO3C030015.2 Cucumis melo HOM05D019030 ORTHO05D017703 4.4e-13 77.8 54 72.2
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 2.2e-12 75.5 47 76.6
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 2.2e-12 75.5 65 61.5
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.2e-12 75.5 49 73.5
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 2.2e-12 75.5 47 76.6
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 4.9e-12 74.3 46 76.1
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.1e-11 73.2 47 74.5
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 1.4e-11 72.8 46 73.9
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.4e-11 72.8 47 74.5
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.4e-11 72.8 47 74.5
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.4e-11 72.8 47 74.5
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.9e-11 72.4 45 75.6
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 2.4e-11 72.0 46 73.9
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.1e-11 71.2 40 80.0
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 5.4e-11 70.9 48 70.8
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 5.4e-11 70.9 48 70.8
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 9.2e-11 70.1 60 60.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.6e-10 69.3 62 56.5
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.7e-09 65.9 35 88.6
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.9e-09 64.7 38 81.6
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 5.1e-09 64.3 36 77.8
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 5.1e-09 64.3 38 78.9
SEGI_01859 Sequoiadendron giganteum HOM05D003751 ORTHO05D017703 5.1e-09 64.3 48 62.5
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 6.6e-09 63.9 37 86.5
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 8.7e-09 63.5 65 56.9
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 8.7e-09 63.5 50 64.0
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.5e-08 62.8 50 64.0
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.9e-08 62.4 49 65.3
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.9e-08 62.4 40 75.0
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 2.5e-08 62.0 40 75.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.5e-08 62.0 40 72.5
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 2.5e-08 62.0 40 72.5
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.5e-08 62.0 40 75.0
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.5e-08 62.0 40 75.0
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 3.3e-08 61.6 50 62.0
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 3.3e-08 61.6 33 84.8
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.3e-08 61.6 33 84.8
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 3.3e-08 61.6 41 73.2
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 3.3e-08 61.6 40 75.0
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 4.3e-08 61.2 32 87.5
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 4.3e-08 61.2 32 87.5
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.3e-08 61.2 40 72.5
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.3e-08 61.2 40 72.5
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 4.3e-08 61.2 32 87.5
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 4.3e-08 61.2 32 87.5
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 5.6e-08 60.8 42 71.4
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 5.6e-08 60.8 40 72.5
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.3e-08 60.5 40 72.5
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.3e-08 60.5 40 72.5
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 7.3e-08 60.5 40 72.5
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 7.3e-08 60.5 40 72.5
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 7.3e-08 60.5 39 74.4
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 7.3e-08 60.5 32 87.5
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.3e-08 60.5 40 72.5
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.3e-08 60.5 40 72.5
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 7.3e-08 60.5 40 72.5
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 9.6e-08 60.1 32 84.4
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 9.6e-08 60.1 40 72.5
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.2e-07 59.7 33 81.8
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.2e-07 59.7 33 81.8
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.2e-07 59.7 33 81.8
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.2e-07 59.7 40 70.0
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.2e-07 59.7 40 72.5
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 1.2e-07 59.7 40 72.5
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 1.6e-07 59.3 33 81.8
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.6e-07 59.3 32 84.4
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.1e-07 58.9 39 71.8
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.1e-07 58.9 39 71.8
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.1e-07 58.9 39 71.8
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.8e-07 58.5 41 65.9
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.6e-07 58.2 32 81.2
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.6e-07 58.2 33 81.8
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.7e-07 57.8 31 83.9
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 4.7e-07 57.8 40 67.5
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 6.2e-07 57.4 40 70.0
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 6.2e-07 57.4 40 70.0
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 6.2e-07 57.4 43 60.5
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.1e-07 57.0 32 81.2
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.1e-07 57.0 32 81.2
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.4e-06 56.2 40 67.5
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.8e-06 55.8 31 80.6
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 2.4e-06 55.5 31 80.6
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 2.4e-06 55.5 31 80.6
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.1e-06 55.1 37 70.3
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 4.0e-06 54.7 34 73.5
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 5.2e-06 54.3 37 64.9
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 6.9e-06 53.9 31 77.4
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 9.0e-06 53.5 42 61.9


User provided reference genes

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