Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 7.7e-55 216.9 106 100.0
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.8e-32 142.5 87 81.6
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 1.8e-32 142.5 87 81.6
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 1.8e-32 142.5 87 81.6
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 5.4e-32 141.0 87 80.5
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 7.0e-32 140.6 87 79.3
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 7.0e-32 140.6 87 79.3
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 4.6e-31 137.9 87 78.2
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 5.9e-31 137.5 91 75.8
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 5.9e-31 137.5 91 75.8
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 7.8e-31 137.1 91 75.8
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 7.8e-31 137.1 87 78.2
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 1.0e-30 136.7 87 78.2
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 1.3e-30 136.3 87 78.2
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 1.3e-30 136.3 87 78.2
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 1.7e-30 136.0 87 77.0
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 2.3e-30 135.6 91 74.7
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 2.3e-30 135.6 87 77.0
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 3.0e-30 135.2 87 74.7
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 3.9e-30 134.8 87 77.0
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 5.0e-30 134.4 87 75.9
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 6.6e-30 134.0 91 73.6
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 6.6e-30 134.0 91 73.6
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 6.6e-30 134.0 91 73.6
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 6.6e-30 134.0 91 73.6
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 6.6e-30 134.0 91 73.6
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 6.6e-30 134.0 91 73.6
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 6.6e-30 134.0 86 76.7
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 8.6e-30 133.7 86 76.7
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 8.6e-30 133.7 87 75.9
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 1.1e-29 133.3 87 75.9
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 1.1e-29 133.3 87 74.7
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.9e-29 132.5 86 75.6
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 1.9e-29 132.5 85 77.6
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 1.9e-29 132.5 85 77.6
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 1.9e-29 132.5 91 73.6
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 2.5e-29 132.1 89 70.8
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 2.5e-29 132.1 87 75.9
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 3.3e-29 131.7 91 73.6
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 3.3e-29 131.7 87 72.4
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 5.6e-29 131.0 85 77.6
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 5.6e-29 131.0 85 77.6
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 7.3e-29 130.6 86 75.6
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 7.3e-29 130.6 87 74.7
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 7.3e-29 130.6 85 76.5
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 7.3e-29 130.6 91 73.6
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 7.3e-29 130.6 87 73.6
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 9.5e-29 130.2 85 75.3
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 9.5e-29 130.2 87 75.9
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 1.2e-28 129.8 86 75.6
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 1.2e-28 129.8 86 75.6
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 1.2e-28 129.8 87 74.7
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 1.2e-28 129.8 87 75.9
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 1.2e-28 129.8 86 75.6
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 1.6e-28 129.4 87 72.4
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 1.6e-28 129.4 87 73.6
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.6e-28 129.4 72 83.3
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 2.1e-28 129.0 87 73.6
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 2.1e-28 129.0 91 72.5
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 2.8e-28 128.6 86 74.4
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 2.8e-28 128.6 87 74.7
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 2.8e-28 128.6 86 75.6
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 3.6e-28 128.3 86 74.4
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 3.6e-28 128.3 86 74.4
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 3.6e-28 128.3 86 74.4
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 3.6e-28 128.3 86 74.4
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 3.6e-28 128.3 86 74.4
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 3.6e-28 128.3 86 74.4
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 3.6e-28 128.3 85 76.5
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 3.6e-28 128.3 91 72.5
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 3.6e-28 128.3 91 72.5
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 4.7e-28 127.9 87 74.7
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 4.7e-28 127.9 87 74.7
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 4.7e-28 127.9 87 73.6
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 4.7e-28 127.9 87 73.6
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 4.7e-28 127.9 91 71.4
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 4.7e-28 127.9 85 75.3
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 6.2e-28 127.5 86 74.4
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 6.2e-28 127.5 89 71.9
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 6.2e-28 127.5 91 72.5
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 6.2e-28 127.5 87 72.4
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 8.0e-28 127.1 85 75.3
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 8.0e-28 127.1 91 70.3
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 8.0e-28 127.1 87 73.6
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 1.0e-27 126.7 87 73.6
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 1.0e-27 126.7 86 74.4
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 1.4e-27 126.3 87 73.6
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 1.4e-27 126.3 87 72.4
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 1.8e-27 125.9 86 74.4
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 2.3e-27 125.6 87 74.7
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 2.3e-27 125.6 86 73.3
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 2.3e-27 125.6 86 75.6
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.1e-27 125.2 82 75.6
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 3.1e-27 125.2 91 71.4
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 4.0e-27 124.8 87 74.7
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 4.0e-27 124.8 95 67.4
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 5.2e-27 124.4 87 72.4
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 5.2e-27 124.4 96 67.7
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 8.9e-27 123.6 86 72.1
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 8.9e-27 123.6 87 71.3
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 1.2e-26 123.2 101 62.4
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 3.7e-25 118.2 87 69.0
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 1.1e-24 116.7 90 65.6
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 2.4e-24 115.5 86 67.4
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 2.5e-21 105.5 56 87.5
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 7.3e-21 104.0 86 60.5
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 9.5e-21 103.6 85 60.0
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 6.2e-20 100.9 87 56.3
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 1.2e-18 96.7 83 59.0
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 1.5e-18 96.3 87 58.6
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 7.1e-16 87.4 92 45.7
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 1.1e-13 80.1 85 45.9
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 4.3e-13 78.2 87 42.5
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 3.2e-08 62.0 53 64.2


User provided reference genes

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