Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 1.3e-32 142.5 72 100.0
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 4.0e-31 137.5 72 95.8
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 4.0e-31 137.5 72 95.8
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 4.5e-30 134.0 72 94.4
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 5.8e-30 133.7 70 95.7
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 6.5e-29 130.2 72 91.7
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 1.9e-25 118.6 72 84.7
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.9e-25 118.6 74 83.8
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 3.3e-25 117.9 62 95.2
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 3.3e-25 117.9 62 96.8
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 4.0e-23 110.9 74 78.4
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 4.6e-19 97.4 74 67.6
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.3e-18 95.9 74 67.6
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.3e-18 95.9 74 67.6
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 8.7e-18 93.2 74 66.2
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.5e-17 92.4 70 67.1
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 2.5e-17 91.7 74 64.9
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 5.7e-17 90.5 74 63.5
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 5.7e-17 90.5 74 63.5
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 3.7e-16 87.8 61 73.8
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 8.2e-16 86.7 74 60.8
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 8.2e-16 86.7 74 59.5
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.1e-15 86.3 71 66.2
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 2.4e-15 85.1 74 63.5
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 2.4e-15 85.1 74 59.5
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 3.1e-15 84.7 74 59.5
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 4.1e-15 84.3 74 59.5
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 4.1e-15 84.3 70 60.0
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 5.3e-15 84.0 74 58.1
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 6.9e-15 83.6 74 58.1
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 9.0e-15 83.2 74 58.1
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 9.0e-15 83.2 74 58.1
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.2e-14 82.8 74 63.5
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 2.0e-14 82.0 74 59.5
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 3.4e-14 81.3 70 64.3
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 5.9e-14 80.5 74 58.1
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 7.7e-14 80.1 74 58.1
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.7e-13 79.0 70 61.4
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 5.0e-13 77.4 69 58.0
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 6.5e-13 77.0 74 58.1
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 8.5e-13 76.6 71 56.3
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.1e-12 76.3 68 60.3
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.1e-12 76.3 74 56.8
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.9e-12 75.5 68 58.8
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.9e-12 75.5 69 58.0
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 2.5e-12 75.1 69 58.0
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.2e-12 74.7 75 57.3
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.2e-12 74.7 75 57.3
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 4.2e-12 74.3 70 55.7
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 5.5e-12 73.9 69 59.4
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 9.4e-12 73.2 70 57.1
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.2e-11 72.8 78 53.8
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 1.2e-11 72.8 69 59.4
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 1.6e-11 72.4 74 51.4
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.6e-11 72.4 74 55.4
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.1e-11 72.0 60 60.0
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 6.1e-11 70.5 61 59.0
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 7.9e-11 70.1 61 59.0
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.4e-10 69.3 74 50.0
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 3.9e-10 67.8 74 54.1
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 6.7e-10 67.0 69 60.9
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 8.8e-10 66.6 69 53.6
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 1.1e-09 66.2 70 55.7
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 3.3e-09 64.7 60 60.0
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 4.3e-09 64.3 73 50.7
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 4.3e-09 64.3 73 50.7
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 4.3e-09 64.3 73 50.7
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 4.3e-09 64.3 74 47.3
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 4.3e-09 64.3 72 51.4
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 7.4e-09 63.5 72 48.6
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 7.4e-09 63.5 72 48.6
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 7.4e-09 63.5 71 53.5
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 7.4e-09 63.5 72 48.6
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 9.7e-09 63.2 60 58.3
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.3e-08 62.8 70 51.4
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.7e-08 62.4 69 50.7
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 2.2e-08 62.0 68 54.4
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 2.2e-08 62.0 68 42.6
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 2.2e-08 62.0 71 53.5
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 2.2e-08 62.0 68 50.0
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 2.2e-08 62.0 71 49.3
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 3.7e-08 61.2 68 50.0
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.7e-08 61.2 76 51.3
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 4.8e-08 60.8 67 47.8
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 4.8e-08 60.8 72 47.2
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 4.8e-08 60.8 72 47.2
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 8.2e-08 60.1 69 52.2
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.1e-07 59.7 70 44.3
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.1e-07 59.7 69 49.3
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.1e-07 59.7 68 50.0
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 5.3e-07 57.4 76 47.4
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 6.9e-07 57.0 69 53.6
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 6.9e-07 57.0 69 53.6
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 1.5e-06 55.8 68 48.5
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 2.6e-06 55.1 72 44.4


User provided reference genes

Program Settings