Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 1.3e-151 539.7 259 100.0
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 1.7e-140 502.7 262 94.3
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 1.5e-139 499.6 262 93.9
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 1.4e-121 439.9 262 82.1
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 1.2e-109 400.2 268 74.3
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 8.7e-84 314.3 267 59.9
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 5.6e-83 311.6 267 60.3
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 3.1e-81 305.8 278 59.7
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 9.0e-81 304.3 267 59.9
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 3.8e-79 298.9 262 57.6
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 4.9e-79 298.5 267 58.1
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 8.4e-79 297.7 262 57.6
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 8.4e-79 297.7 267 58.8
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 7.1e-78 294.7 264 58.7
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 2.7e-77 292.7 266 56.8
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 3.5e-77 292.4 268 57.5
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 3.5e-77 292.4 268 57.5
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 4.6e-77 292.0 281 54.8
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 3.9e-76 288.9 266 57.1
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 6.7e-76 288.1 267 56.9
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 8.7e-76 287.7 268 54.9
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 1.9e-75 286.6 156 89.7
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 1.3e-74 283.9 258 57.4
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 2.8e-74 282.7 262 55.3
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 3.7e-74 282.3 254 58.3
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 3.7e-74 282.3 267 56.6
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 1.4e-73 280.4 263 55.5
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 1.4e-73 280.4 260 55.4
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 2.4e-73 279.6 267 54.3
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 4.0e-73 278.9 273 52.7
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 4.0e-73 278.9 269 53.2
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 5.3e-73 278.5 257 55.3
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 5.3e-73 278.5 267 52.8
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 6.9e-73 278.1 269 55.4
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 9.0e-73 277.7 263 53.6
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 1.2e-72 277.3 262 56.1
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.2e-72 277.3 273 54.2
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 3.4e-72 275.8 267 55.4
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 5.8e-72 275.0 261 55.2
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 7.6e-72 274.6 260 54.6
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 1.3e-71 273.9 266 55.3
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 1.3e-71 273.9 270 53.7
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 2.2e-71 273.1 264 54.9
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 2.9e-71 272.7 268 53.4
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 4.9e-71 271.9 259 55.2
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 1.4e-70 270.4 263 54.4
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 2.5e-70 269.6 273 52.0
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 1.6e-69 266.9 261 54.4
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 1.8e-68 263.5 256 54.7
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 5.1e-68 261.9 271 48.0
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 5.1e-68 261.9 266 52.6
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 6.7e-68 261.5 259 54.1
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 6.7e-68 261.5 282 51.4
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 8.7e-68 261.2 262 51.1
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 1.5e-67 260.4 261 52.1
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 3.3e-67 259.2 262 52.3
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 3.3e-67 259.2 259 53.7
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 8.2e-66 254.6 263 52.1
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 1.1e-65 254.2 191 62.8
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 1.8e-65 253.4 256 52.3
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 1.5e-64 250.4 256 51.2
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 2.0e-64 250.0 260 51.5
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 2.0e-64 250.0 262 51.1
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 2.0e-64 250.0 226 59.3
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 2.0e-64 250.0 191 63.9
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 1.3e-63 247.3 271 53.1
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 3.8e-63 245.7 282 47.9
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 4.9e-63 245.4 200 61.5
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 6.5e-63 245.0 220 56.4
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 1.9e-62 243.4 302 46.0
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 2.5e-62 243.0 260 52.3
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 2.5e-62 243.0 256 51.2
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 2.5e-62 243.0 256 52.3
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 4.2e-62 242.3 264 48.5
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 4.2e-62 242.3 229 53.7
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 5.5e-62 241.9 191 61.8
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 5.5e-62 241.9 223 56.1
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 1.1e-59 234.2 240 51.7
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 1.5e-59 233.8 263 47.9
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 1.1e-57 227.6 219 53.4
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 1.8e-57 226.9 268 46.3
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 6.9e-57 224.9 280 45.7
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 5.9e-56 221.9 261 47.9
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 7.9e-53 211.5 260 45.4
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 3.7e-50 202.6 263 44.1
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 1.1e-49 201.1 261 46.0
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 1.2e-48 197.6 258 43.4
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 2.6e-48 196.4 198 54.0
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.4e-46 190.7 140 63.6
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 5.5e-46 188.7 273 40.7
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 7.9e-45 184.9 259 46.3
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 1.8e-44 183.7 186 51.1
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 3.3e-43 179.5 192 52.6
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 3.3e-43 179.5 308 37.7
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 4.4e-43 179.1 198 51.5
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 9.7e-43 177.9 203 49.3
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 3.7e-42 176.0 204 51.0
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 1.2e-40 171.0 154 62.3
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 2.5e-38 163.3 190 50.5
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.3e-34 151.0 179 48.6
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 9.1e-33 144.8 135 57.0
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 1.2e-32 144.4 160 50.0
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 9.4e-30 134.8 172 47.7
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 1.2e-29 134.4 260 35.0
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 8.8e-28 128.3 161 47.2
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 2.6e-27 126.7 246 34.1
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 5.7e-27 125.6 126 46.8
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 2.0e-24 117.1 70 74.3
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 7.7e-24 115.2 160 45.0
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 2.5e-22 110.2 71 71.8
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 3.1e-17 93.2 173 32.4
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 2.3e-12 77.0 175 29.7
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 5.7e-11 72.4 131 33.6
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 7.5e-11 72.0 213 29.1
Os04g0602700 Oryza sativa ssp. japonica HOM05D007105 ORTHO05D009304 7.8e-08 62.0 181 26.0
CBR_g45547 Chara braunii HOM05D003201 ORTHO05D008805 5.0e-07 59.3 264 25.8
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 2.5e-06 57.0 230 26.1
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 2.5e-06 57.0 230 26.1


User provided reference genes

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