Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 6.1e-296 1020.0 497 100.0
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 8.0e-288 993.0 497 97.6
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 7.9e-219 763.8 498 78.1
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 1.6e-163 580.1 520 58.5
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 2.6e-161 572.8 363 79.6
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 2.2e-160 569.7 368 77.2
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 4.9e-144 515.4 512 52.9
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 5.1e-141 505.4 508 53.3
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 1.3e-139 500.7 515 52.4
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 1.8e-138 496.9 508 51.0
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 1.5e-137 493.8 516 51.4
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 1.9e-135 486.9 535 49.5
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 2.8e-131 473.0 524 50.0
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 4.0e-130 469.2 510 48.2
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 1.5e-129 467.2 513 48.7
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 2.2e-128 463.4 519 49.3
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 3.8e-128 462.6 517 48.4
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 1.4e-127 460.7 506 49.8
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 1.9e-127 460.3 513 47.6
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 9.3e-127 458.0 459 52.5
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 2.7e-126 456.4 498 49.6
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 3.0e-125 453.0 516 48.4
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 3.3e-124 449.5 501 48.7
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 1.3e-123 447.6 514 49.6
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 1.8e-122 443.7 509 47.2
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 9.0e-122 441.4 511 48.5
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 1.5e-121 440.7 517 49.7
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 1.3e-120 437.6 513 46.2
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 2.2e-120 436.8 518 46.7
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 3.8e-120 436.0 518 47.7
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 6.5e-120 435.3 507 48.1
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 2.7e-118 429.9 510 48.8
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.6e-118 429.5 504 46.2
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.0e-117 427.9 474 48.1
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 1.0e-117 427.9 512 47.3
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 1.8e-117 427.2 517 49.3
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 6.7e-117 425.2 516 45.7
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 8.7e-117 424.9 515 46.4
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 1.9e-116 423.7 518 47.7
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 7.4e-116 421.8 646 41.3
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 6.3e-115 418.7 514 47.3
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 8.2e-115 418.3 514 47.7
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 8.2e-115 418.3 514 47.7
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 1.2e-113 414.5 512 46.1
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.2e-113 414.5 466 47.6
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 3.4e-113 412.9 514 47.3
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 3.8e-112 409.5 522 45.6
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 6.1e-110 402.1 501 45.7
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 1.1e-108 397.9 514 45.5
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 4.4e-108 396.0 487 45.4
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 2.2e-107 393.7 467 48.4
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 1.1e-106 391.3 510 43.5
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 5.3e-106 389.0 518 46.1
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 3.4e-105 386.3 502 44.8
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 8.5e-104 381.7 508 43.9
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 1.1e-103 381.3 661 38.7
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 5.5e-103 379.0 462 46.3
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 4.7e-102 375.9 441 45.4
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 1.1e-100 371.3 398 48.5
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 2.4e-98 363.6 499 42.3
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 9.1e-98 361.7 880 30.7
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 2.0e-97 360.5 498 42.2
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 6.5e-96 355.5 514 42.4
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 6.5e-96 355.5 506 42.1
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 1.1e-95 354.8 359 53.2
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 5.5e-95 352.4 513 41.7
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 2.1e-94 350.5 521 41.1
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 2.7e-94 350.1 514 41.8
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 3.6e-94 349.7 515 41.7
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 3.0e-93 346.7 476 42.0
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 1.5e-92 344.4 517 40.8
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 2.0e-92 344.0 447 45.2
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 3.3e-92 343.2 509 41.3
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 9.7e-92 341.7 470 41.9
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 2.7e-89 333.6 513 41.9
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 2.9e-88 330.1 510 39.8
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 6.5e-88 328.9 510 40.2
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 8.5e-88 328.6 514 38.9
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 1.5e-87 327.8 402 43.5
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 5.5e-87 325.9 515 39.0
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 6.1e-86 322.4 447 43.8
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 1.0e-85 321.6 504 40.7
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 1.7e-83 314.3 404 44.6
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 4.1e-82 309.7 536 36.0
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 4.0e-77 293.1 509 40.5
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 1.2e-73 281.6 450 39.3
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 2.0e-65 254.2 317 45.7
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 2.1e-62 244.2 328 42.7
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 5.8e-60 236.1 285 44.9
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 5.4e-58 229.6 273 48.7
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 1.6e-54 218.0 539 30.4
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 4.7e-54 216.5 267 46.8
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 5.2e-53 213.0 303 40.9
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 2.2e-51 207.6 335 39.4
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 7.1e-50 202.6 474 31.0
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 8.1e-46 189.1 261 43.3
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 8.4e-43 179.1 281 40.9
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 3.5e-41 173.7 548 28.3
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 6.9e-37 159.5 207 43.5
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 7.6e-36 156.0 146 54.1
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 9.9e-36 155.6 312 35.6
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 1.9e-34 151.4 169 45.0
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 9.6e-31 139.0 478 27.0
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 8.4e-27 125.9 171 43.3
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 8.4e-27 125.9 133 52.6
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 2.4e-26 124.4 137 50.4
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 5.4e-26 123.2 117 55.6
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 2.7e-25 120.9 102 59.8
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 1.1e-23 115.5 571 22.8
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 1.9e-23 114.8 257 31.9
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 1.1e-21 109.0 132 48.5
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 8.4e-19 99.4 131 42.7
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 2.1e-17 94.7 252 31.3
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 1.4e-13 82.0 135 38.5
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 2.6e-12 77.8 124 39.5
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 1.7e-11 75.1 92 54.3
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 7.1e-10 69.7 136 35.3
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 7.1e-10 69.7 136 35.3
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 9.3e-10 69.3 69 55.1
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 1.3e-08 65.5 114 38.6
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 1.3e-08 65.5 114 38.6
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 1.3e-08 65.5 114 38.6
Atru.chr3.3228 Acer truncatum HOM05D000154 ORTHO05D000092 6.7e-08 63.2 61 49.2
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 3.3e-07 60.8 129 30.2
CiPaw.09G139700 Carya illinoinensis HOM05D005725 ORTHO05D007531 8.2e-06 56.2 140 31.4


User provided reference genes

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