Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g015890 Solanum pennellii HOM05D000023 ORTHO05D002750 2.7e-112 408.7 204 100.0
Sopen08g011680 Solanum pennellii HOM05D000004 ORTHO05D000002 8.5e-42 174.5 104 83.7
Solyc01g020480.1 Solanum lycopersicum HOM05D000023 ORTHO05D000014 3.2e-33 146.0 103 77.7
Nitab4.5_0009099g0030 Nicotiana tabacum HOM05D000023 ORTHO05D002750 4.2e-33 145.6 103 69.9
Nitab4.5_0000644g0070 Nicotiana tabacum HOM05D000023 ORTHO05D002750 1.0e-31 141.0 97 71.1
Nitab4.5_0004620g0060 Nicotiana tabacum HOM05D000023 ORTHO05D002750 2.6e-22 109.8 93 61.3
SHI10238 Sapria himalayana HOM05D000023 ORTHO05D000014 2.5e-17 93.2 84 50.0
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 7.2e-17 91.7 84 50.0
SHI14959 Sapria himalayana HOM05D000023 ORTHO05D000014 2.7e-16 89.7 85 47.1
SHI47314 Sapria himalayana HOM05D000023 ORTHO05D000014 2.7e-16 89.7 84 48.8
SHI47801 Sapria himalayana HOM05D000023 ORTHO05D000014 2.7e-16 89.7 84 48.8
SHI07784 Sapria himalayana HOM05D000023 ORTHO05D002750 4.7e-16 89.0 84 47.6
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 6.1e-16 88.6 85 47.1
SHI07150 Sapria himalayana HOM05D000023 ORTHO05D000014 8.0e-16 88.2 84 47.6
SHI23518 Sapria himalayana HOM05D000023 ORTHO05D002750 8.0e-16 88.2 85 47.1
GSVIVG01021057001 Vitis vinifera HOM05D000628 ORTHO05D001866 1.0e-15 87.8 81 48.1
GSVIVG01032025001 Vitis vinifera HOM05D000073 ORTHO05D000033 1.0e-15 87.8 84 47.6
SHI21431 Sapria himalayana HOM05D005437 ORTHO05D002750 1.8e-15 87.0 85 45.9
SHI14664 Sapria himalayana HOM05D000023 ORTHO05D000014 6.7e-15 85.1 85 45.9
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 6.7e-15 85.1 85 45.9
SHI00996 Sapria himalayana HOM05D002920 ORTHO05D000014 1.5e-14 84.0 85 45.9
SHI01741 Sapria himalayana HOM05D000499 ORTHO05D002036 2.6e-14 83.2 85 43.5
SHI16364 Sapria himalayana HOM05D000023 ORTHO05D002750 5.7e-14 82.0 87 43.7
SHI03240 Sapria himalayana HOM05D000023 ORTHO05D000014 1.7e-13 80.5 84 45.2
TWI53G0199 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.7e-13 80.5 81 44.4
SHI28174 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-13 79.7 85 43.5
SHI08624 Sapria himalayana HOM05D000023 ORTHO05D000014 3.1e-12 76.3 87 42.5
SHI32488 Sapria himalayana HOM05D000023 ORTHO05D002750 1.3e-10 70.9 85 40.0
RcHm_v2.0_Chr5g0080051 Rosa chinensis HOM05D000023 ORTHO05D002750 1.7e-10 70.5 78 48.7
SHI12781 Sapria himalayana HOM05D000023 ORTHO05D002750 5.0e-10 68.9 66 47.0
RcHm_v2.0_Chr2g0141951 Rosa chinensis HOM05D000023 ORTHO05D000014 2.5e-09 66.6 86 44.2
SHI09417 Sapria himalayana HOM05D000023 ORTHO05D000014 2.5e-09 66.6 60 51.7
SHI06139 Sapria himalayana HOM05D000515 ORTHO05D003188 3.2e-09 66.2 85 40.0
SHI13828 Sapria himalayana HOM05D000023 ORTHO05D000014 3.2e-09 66.2 53 56.6
SHI01144 Sapria himalayana HOM05D000023 ORTHO05D002750 7.2e-09 65.1 90 40.0
SHI20408 Sapria himalayana HOM05D004595 ORTHO05D002750 9.4e-09 64.7 66 45.5
SHI00079 Sapria himalayana HOM05D000023 ORTHO05D002750 1.2e-08 64.3 58 48.3
SHI08345 Sapria himalayana HOM05D000023 ORTHO05D002750 1.6e-08 63.9 77 37.7
SHI21551 Sapria himalayana HOM05D000030 ORTHO05D002750 1.6e-08 63.9 62 46.8
RcHm_v2.0_Chr1g0361961 Rosa chinensis HOM05D000023 ORTHO05D002750 2.7e-08 63.2 106 39.6
Lj2C491G6 Lonicera japonica HOM05D000023 ORTHO05D002750 4.7e-08 62.4 81 44.4
Lj8P661T5 Lonicera japonica HOM05D000023 ORTHO05D002750 6.1e-08 62.0 83 43.4
Lj8P655T9 Lonicera japonica HOM05D000023 ORTHO05D002750 8.0e-08 61.6 83 43.4
SHI13211 Sapria himalayana HOM05D000023 ORTHO05D000014 8.0e-08 61.6 85 37.6
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 8.0e-08 61.6 77 39.0
MD01G1106300 Malus domestica HOM05D000023 ORTHO05D000014 1.4e-07 60.8 131 33.6
SHI12368 Sapria himalayana HOM05D000023 ORTHO05D000014 1.4e-07 60.8 50 56.0
FvH4_3g33921 Fragaria vesca HOM05D000023 ORTHO05D000014 1.8e-07 60.5 86 40.7
FvH4_5g36511 Fragaria vesca HOM05D014056 ORTHO05D022566 1.8e-07 60.5 86 40.7
FvH4_6g16931 Fragaria vesca HOM05D014056 ORTHO05D002750 1.8e-07 60.5 86 40.7
SHI02424 Sapria himalayana HOM05D000023 ORTHO05D002750 2.3e-07 60.1 49 49.0
SHI16604 Sapria himalayana HOM05D000023 ORTHO05D002750 3.0e-07 59.7 69 40.6
arahy.Tifrunner.gnm1.ann1.8ZYM5I Arachis hypogaea HOM05D000023 ORTHO05D000014 5.2e-07 58.9 97 33.0
FvH4_2g19761 Fragaria vesca HOM05D000023 ORTHO05D000014 5.2e-07 58.9 114 36.8
Lj1P332T15 Lonicera japonica HOM05D000023 ORTHO05D000014 5.2e-07 58.9 83 42.2
Lj6P498T15 Lonicera japonica HOM05D000023 ORTHO05D002750 5.2e-07 58.9 83 42.2
SHI17644 Sapria himalayana HOM05D000023 ORTHO05D002750 6.8e-07 58.5 66 40.9
SHI22487 Sapria himalayana HOM05D000023 ORTHO05D002750 6.8e-07 58.5 125 32.0
SHI32462 Sapria himalayana HOM05D000023 ORTHO05D002750 6.8e-07 58.5 85 38.8
arahy.Tifrunner.gnm1.ann1.JW9I8M Arachis hypogaea HOM05D000023 ORTHO05D002750 8.8e-07 58.2 60 41.7
arahy.Tifrunner.gnm1.ann1.TR6CUS Arachis hypogaea HOM05D000023 ORTHO05D000014 8.8e-07 58.2 111 32.4
MD01G1106700 Malus domestica HOM05D000023 ORTHO05D000014 8.8e-07 58.2 137 31.4
Psat7g023240 Pisum sativum HOM05D000023 ORTHO05D000014 8.8e-07 58.2 88 36.4
SHI29852 Sapria himalayana HOM05D000023 ORTHO05D000014 8.8e-07 58.2 52 51.9
TPR.G26303 Trifolium pratense HOM05D000023 ORTHO05D000014 8.8e-07 58.2 105 33.3
TWI63G1250 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 8.8e-07 58.2 104 35.6
arahy.Tifrunner.gnm1.ann1.BDH6KM Arachis hypogaea HOM05D000023 ORTHO05D000014 1.2e-06 57.8 111 31.5
Lj2P953T31 Lonicera japonica HOM05D000023 ORTHO05D002750 1.2e-06 57.8 88 36.4
Lj4P619T3 Lonicera japonica HOM05D000023 ORTHO05D002750 1.2e-06 57.8 88 36.4
Lj8P561T28 Lonicera japonica HOM05D000023 ORTHO05D002750 1.2e-06 57.8 88 36.4
Lj1g0002954 Lotus japonicus HOM05D000023 ORTHO05D000014 1.5e-06 57.4 83 38.6
SHI26805 Sapria himalayana HOM05D002012 ORTHO05D002750 2.0e-06 57.0 44 54.5
Lj1P964T40 Lonicera japonica HOM05D000023 ORTHO05D002750 2.6e-06 56.6 88 35.2
Lj9C56T3 Lonicera japonica HOM05D000023 ORTHO05D002750 2.6e-06 56.6 83 41.0
Lj9P526T21 Lonicera japonica HOM05D000023 ORTHO05D002750 2.6e-06 56.6 71 39.4
Psat6g192520 Pisum sativum HOM05D000023 ORTHO05D000014 2.6e-06 56.6 88 35.2
arahy.Tifrunner.gnm1.ann1.H35DJI Arachis hypogaea HOM05D000023 ORTHO05D002750 3.4e-06 56.2 108 32.4
CSS0016206 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 3.4e-06 56.2 75 40.0
CSS0023595 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 4.4e-06 55.8 42 59.5
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 4.4e-06 55.8 58 43.1
arahy.Tifrunner.gnm1.ann1.VS78B6 Arachis hypogaea HOM05D000023 ORTHO05D000014 5.7e-06 55.5 67 40.3
FvH4_7g30891 Fragaria vesca HOM05D000023 ORTHO05D000014 5.7e-06 55.5 75 38.7
SHI00440 Sapria himalayana HOM05D000023 ORTHO05D000014 5.7e-06 55.5 50 50.0
SHI25003 Sapria himalayana HOM05D004426 ORTHO05D002750 5.7e-06 55.5 67 35.8
SHI28506 Sapria himalayana HOM05D000023 ORTHO05D000014 5.7e-06 55.5 50 50.0
arahy.Tifrunner.gnm1.ann1.1A1CKU Arachis hypogaea HOM05D000023 ORTHO05D000014 7.5e-06 55.1 111 32.4
arahy.Tifrunner.gnm1.ann1.M9HV3F Arachis hypogaea HOM05D000023 ORTHO05D000014 7.5e-06 55.1 67 37.3
CSS0007279 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 7.5e-06 55.1 73 41.1
CSS0024754 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 7.5e-06 55.1 73 41.1
arahy.Tifrunner.gnm1.ann1.0D33HZ Arachis hypogaea HOM05D000023 ORTHO05D002750 9.8e-06 54.7 67 40.3
arahy.Tifrunner.gnm1.ann1.CB97FM Arachis hypogaea HOM05D000023 ORTHO05D000014 9.8e-06 54.7 67 40.3
arahy.Tifrunner.gnm1.ann1.YCYQ9Q Arachis hypogaea HOM05D000023 ORTHO05D000014 9.8e-06 54.7 67 40.3
FvH4_4g22271 Fragaria vesca HOM05D000047 ORTHO05D001383 9.8e-06 54.7 132 30.3
SHI09001 Sapria himalayana HOM05D004490 ORTHO05D005353 9.8e-06 54.7 67 40.3


User provided reference genes

Program Settings