Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g015220 Solanum pennellii HOM05D007662 ORTHO05D009666 2.1e-29 131.7 67 100.0
Solyc01g020320.3 Solanum lycopersicum HOM05D007662 ORTHO05D009666 6.0e-29 130.2 67 98.5
Nitab4.5_0007654g0010 Nicotiana tabacum HOM05D007662 ORTHO05D009666 3.4e-24 114.4 74 82.4
PGSC0003DMG400017905 Solanum tuberosum HOM05D007662 ORTHO05D009666 8.4e-23 109.8 69 85.5
PGSC0003DMG400015999 Solanum tuberosum HOM05D007662 ORTHO05D009666 1.1e-22 109.4 60 91.7
Nitab4.5_0000488g0050 Nicotiana tabacum HOM05D007662 ORTHO05D009666 1.2e-21 105.9 58 91.4
Peaxi162Scf00336g00087 Petunia axillaris HOM05D007662 ORTHO05D009666 2.4e-17 91.7 58 82.8
Hma1.2p1_0972F.1_g242860 Hydrangea macrophylla HOM05D007662 ORTHO05D009666 7.6e-16 86.7 59 78.0
Peaxi162Scf00451g00322 Petunia axillaris HOM05D007662 ORTHO05D009666 1.7e-15 85.5 57 80.7
Rhsim02G0233900 Rhododendron simsii HOM05D007662 ORTHO05D009666 3.8e-15 84.3 58 77.6
Prupe.6G011500 Prunus persica HOM05D007662 ORTHO05D009666 8.4e-15 83.2 57 73.7
Rhsim02G0233800 Rhododendron simsii HOM05D007662 ORTHO05D009666 1.9e-14 82.0 58 75.9
MD03G1011000 Malus domestica HOM05D007662 ORTHO05D009666 2.4e-14 81.6 56 75.0
Atru.chr3.2207 Acer truncatum HOM05D007662 ORTHO05D009666 3.2e-14 81.3 64 64.1
TAR623G1524 Trochodendron aralioides HOM05D007662 ORTHO05D009666 4.2e-14 80.9 49 79.6
Lj1g0001682 Lotus japonicus HOM05D007662 ORTHO05D009666 7.1e-14 80.1 71 62.0
AL3G53480 Arabidopsis lyrata HOM05D007662 ORTHO05D009666 9.3e-14 79.7 49 75.5
Carub.0003s3490 Capsella rubella HOM05D007662 ORTHO05D009666 9.3e-14 79.7 45 80.0
Cpa.g.sc119.89 Carica papaya HOM05D007662 ORTHO05D009666 9.3e-14 79.7 43 88.4
Haze_22992 Corylus avellana HOM05D007662 ORTHO05D009666 9.3e-14 79.7 55 72.7
Manes.15G104500 Manihot esculenta HOM05D007662 ORTHO05D009666 9.3e-14 79.7 56 73.2
Nn7g35960 Nelumbo nucifera HOM05D007662 ORTHO05D009666 9.3e-14 79.7 52 78.8
Cfa009623 Carpinus fangiana HOM05D007662 ORTHO05D009666 1.2e-13 79.3 56 71.4
Cc01_g01030 Coffea canephora HOM05D007662 ORTHO05D009666 1.2e-13 79.3 61 70.5
GSVIVG01025388001 Vitis vinifera HOM05D007662 ORTHO05D009666 1.2e-13 79.3 67 64.2
CANSAT54G1122 Cannabis sativa HOM05D007662 ORTHO05D009666 1.6e-13 79.0 67 65.7
CARHR111030 Cardamine hirsuta HOM05D007662 ORTHO05D009666 2.1e-13 78.6 45 80.0
PSO384G2541 Papaver somniferum HOM05D007662 ORTHO05D009666 3.5e-13 77.8 52 73.1
CSS0010518 Camellia sinensis var. sinensis HOM05D007662 ORTHO05D009666 4.6e-13 77.4 54 72.2
Carub.0003s3492 Capsella rubella HOM05D007662 ORTHO05D009666 6.0e-13 77.0 45 80.0
PGR119G1192 Punica granatum HOM05D007662 ORTHO05D009666 1.0e-12 76.3 52 73.1
HanXRQChr02g0056871 Helianthus annuus HOM05D007662 ORTHO05D009666 1.3e-12 75.9 57 71.9
Phvul.008G106450 Phaseolus vulgaris HOM05D007662 ORTHO05D009666 1.8e-12 75.5 55 70.9
CiPaw.12G007400 Carya illinoinensis HOM05D007662 ORTHO05D009666 2.3e-12 75.1 40 82.5
AT2G20480 Arabidopsis thaliana HOM05D007662 ORTHO05D009666 3.0e-12 74.7 45 77.8
DCAR_024358 Daucus carota HOM05D007662 ORTHO05D009666 3.0e-12 74.7 65 66.2
Gohir.A08G012100 Gossypium hirsutum HOM05D007662 ORTHO05D009666 3.0e-12 74.7 57 66.7
Gohir.D08G022600 Gossypium hirsutum HOM05D007662 ORTHO05D009666 3.0e-12 74.7 57 66.7
Gorai.004G017900 Gossypium raimondii HOM05D007662 ORTHO05D009666 3.0e-12 74.7 57 66.7
Sabra01G0007400 Salix brachista HOM05D007662 ORTHO05D009666 3.0e-12 74.7 69 59.4
Duzib168G0137 Durio zibethinus HOM05D007662 ORTHO05D009666 3.9e-12 74.3 53 71.7
Glyma.18G180600 Glycine max HOM05D007662 ORTHO05D009666 3.9e-12 74.3 54 72.2
COL.COLO4_10450 Corchorus olitorius HOM05D007662 ORTHO05D009666 5.1e-12 73.9 51 74.5
Migut.N02119 Erythranthe guttata HOM05D007662 ORTHO05D009666 5.1e-12 73.9 71 59.2
FAN11G0548 Fragaria x ananassa HOM05D007662 ORTHO05D009666 6.7e-12 73.6 55 69.1
FAN21G0034 Fragaria x ananassa HOM05D007662 ORTHO05D009666 6.7e-12 73.6 55 69.1
FAN25G2111 Fragaria x ananassa HOM05D007662 ORTHO05D009666 6.7e-12 73.6 55 69.1
MBI13_g29646_MAGBIO Magnolia biondii HOM05D007662 ORTHO05D009666 6.7e-12 73.6 59 69.5
BcaB08g34910 Brassica carinata HOM05D007662 ORTHO05D009666 8.7e-12 73.2 50 74.0
CsaV3_4G023520 Cucumis sativus L. HOM05D007662 ORTHO05D009666 8.7e-12 73.2 65 64.6
Thhalv10002142m.g Eutrema salsugineum HOM05D007662 ORTHO05D009666 8.7e-12 73.2 48 72.9
Glyma.07G131900 Glycine max HOM05D007662 ORTHO05D009666 8.7e-12 73.2 60 65.0
Manes.04G126551 Manihot esculenta HOM05D007662 ORTHO05D009666 8.7e-12 73.2 56 69.6
C07p00560 Brassica napus HOM05D007662 ORTHO05D009666 1.5e-11 72.4 50 74.0
Medtr4g095740 Medicago truncatula HOM05D007662 ORTHO05D009666 1.5e-11 72.4 47 76.6
Potri.001G009501 Populus trichocarpa HOM05D007662 ORTHO05D009666 1.5e-11 72.4 69 59.4
Sp3g33680 Schrenkiella parvula HOM05D007662 ORTHO05D009666 1.5e-11 72.4 52 73.1
Aa31LG8G17430 Aethionema arabicum HOM05D007662 ORTHO05D009666 1.9e-11 72.0 46 71.7
BcaC06g36736 Brassica carinata HOM05D007662 ORTHO05D009666 1.9e-11 72.0 50 74.0
BolC7t40501H Brassica oleracea HOM05D007662 ORTHO05D009666 1.9e-11 72.0 50 74.0
BraA07t27819Z Brassica rapa HOM05D007662 ORTHO05D009666 1.9e-11 72.0 46 73.9
Lsat_1_v5_gn_6_51400 Lactuca sativa HOM05D007662 ORTHO05D009666 1.9e-11 72.0 62 64.5
Prupe.2G113800 Prunus persica HOM05D007662 ORTHO05D009666 1.9e-11 72.0 56 67.9
arahy.Tifrunner.gnm1.ann1.MELV6S Arachis hypogaea HOM05D007662 ORTHO05D009666 3.3e-11 71.2 56 66.1
A07p00270 Brassica napus HOM05D007662 ORTHO05D009666 3.3e-11 71.2 46 73.9
ClCG02G023850 Citrullus lanatus HOM05D007662 ORTHO05D009666 3.3e-11 71.2 65 63.1
FAN16G0597 Fragaria x ananassa HOM05D007662 ORTHO05D009666 3.3e-11 71.2 55 67.3
Psat3g140280 Pisum sativum HOM05D007662 ORTHO05D009666 4.3e-11 70.9 57 68.4
ATR0598G132 Amborella trichopoda HOM05D007662 ORTHO05D009666 5.6e-11 70.5 46 71.7
Oeu002702.1 Olea europaea HOM05D007662 ORTHO05D009666 5.6e-11 70.5 46 82.6
RcHm_v2.0_Chr5g0081401 Rosa chinensis HOM05D007662 ORTHO05D009666 9.6e-11 69.7 43 79.1
SalBow6G4367 Salvia bowleyana HOM05D007662 ORTHO05D009666 1.3e-10 69.3 49 73.5
SalBow8G2777 Salvia bowleyana HOM05D007662 ORTHO05D009666 1.3e-10 69.3 49 73.5
Sed0021510 Sechium edule HOM05D007662 ORTHO05D009666 1.3e-10 69.3 57 66.7
C08p42210 Brassica napus HOM05D007662 ORTHO05D009666 1.6e-10 68.9 46 78.3
BolC8t51780H Brassica oleracea HOM05D007662 ORTHO05D009666 1.6e-10 68.9 46 78.3
Lalb_Chr03g0042221 Lupinus albus HOM05D007662 ORTHO05D009666 1.6e-10 68.9 58 63.8
Thecc.09G214700 Theobroma cacao HOM05D007662 ORTHO05D009666 1.6e-10 68.9 61 67.2
arahy.Tifrunner.gnm1.ann1.0G84UH Arachis hypogaea HOM05D007662 ORTHO05D009666 2.1e-10 68.6 56 64.3
BcaB03g16842 Brassica carinata HOM05D007662 ORTHO05D009666 2.8e-10 68.2 59 66.1
unitig_8.g3321 Utricularia gibba HOM05D007662 ORTHO05D009666 3.7e-10 67.8 38 86.8
TWI32G0733 Tripterygium wilfordii HOM05D007662 ORTHO05D009666 6.2e-10 67.0 58 63.8
Os09g0446000 Oryza sativa ssp. japonica HOM05D007662 ORTHO05D009666 8.2e-10 66.6 37 78.4
BcaC07g41215 Brassica carinata HOM05D007662 ORTHO05D009666 1.1e-09 66.2 46 76.1
Aqoxy1G00152 Aquilegia oxysepala HOM05D007662 ORTHO05D009666 1.4e-09 65.9 72 55.6
HPP92_019156 Vanilla planifolia HOM05D007662 ORTHO05D009666 1.8e-09 65.5 61 59.0
Eucgr.B02616 Eucalyptus grandis HOM05D007662 ORTHO05D009666 2.4e-09 65.1 73 52.1
Eucgr.L03549 Eucalyptus grandis HOM05D007662 ORTHO05D009666 2.4e-09 65.1 73 52.1
ECA233G5312 Erigeron canadensis HOM05D007662 ORTHO05D009666 6.9e-09 63.5 38 78.9
A09p58880 Brassica napus HOM05D007662 ORTHO05D009666 1.2e-08 62.8 38 78.9
BraA09t41274Z Brassica rapa HOM05D007662 ORTHO05D009666 1.2e-08 62.8 38 78.9
Hund07566 Selenicereus undatus HOM05D007662 ORTHO05D009666 1.5e-08 62.4 59 54.2
EL10Ac4g10342 Beta vulgaris HOM05D007662 ORTHO05D009666 2.0e-08 62.0 51 56.9
Zm00001eb314380 Zea mays HOM05D007662 ORTHO05D009666 4.5e-08 60.8 41 70.7
SEGI_07868 Sequoiadendron giganteum HOM05D007662 ORTHO05D009666 3.8e-07 57.8 39 64.1


User provided reference genes

Program Settings