Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 5.9e-175 617.5 318 100.0
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 4.4e-170 601.3 319 98.1
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 3.8e-166 588.2 318 95.6
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 1.8e-147 526.2 328 83.5
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 6.6e-142 507.7 324 83.3
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 1.8e-139 499.6 317 83.6
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 3.0e-139 498.8 306 83.3
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 2.4e-96 356.3 332 59.3
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 2.1e-95 353.2 330 59.4
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 3.0e-94 349.4 346 57.8
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 6.7e-94 348.2 345 58.0
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 5.6e-93 345.1 341 57.2
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 5.6e-93 345.1 345 55.7
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 9.6e-93 344.4 314 60.5
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 9.6e-93 344.4 316 61.1
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 3.7e-92 342.4 330 57.6
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 4.0e-91 339.0 324 58.3
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 4.0e-91 339.0 336 54.8
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 5.3e-91 338.6 312 58.7
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 2.0e-90 336.7 317 58.7
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 1.7e-89 333.6 321 60.7
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 2.2e-89 333.2 331 57.4
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 6.4e-89 331.6 327 58.4
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 3.2e-88 329.3 322 57.5
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 5.5e-88 328.6 334 56.6
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 1.0e-86 324.3 328 56.1
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 1.0e-86 324.3 331 53.5
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 1.3e-86 323.9 326 58.0
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 2.3e-86 323.2 327 54.7
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 3.9e-86 322.4 335 55.8
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 6.7e-86 321.6 330 55.5
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 8.7e-86 321.2 357 50.7
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 1.1e-85 320.9 336 54.2
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 1.1e-85 320.9 323 57.0
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 3.3e-85 319.3 335 55.2
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 4.3e-85 318.9 339 54.0
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 5.6e-85 318.5 315 54.6
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 1.6e-84 317.0 332 55.7
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 3.7e-84 315.8 322 58.7
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 3.7e-84 315.8 322 58.7
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 4.8e-84 315.5 342 55.0
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 6.2e-84 315.1 330 54.8
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 1.8e-83 313.5 316 51.6
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.8e-83 313.5 319 57.4
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 2.4e-83 313.2 335 55.2
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 3.1e-83 312.8 319 57.7
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 3.1e-83 312.8 323 52.6
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 4.0e-83 312.4 324 52.5
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 4.0e-83 312.4 323 52.3
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 6.9e-83 311.6 307 58.3
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 9.0e-83 311.2 343 53.9
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.2e-82 310.8 319 58.3
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 3.4e-82 309.3 309 56.0
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 3.4e-82 309.3 334 53.6
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 5.8e-82 308.5 334 53.6
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 7.6e-82 308.1 336 50.9
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 1.7e-81 307.0 329 51.7
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 2.9e-81 306.2 319 50.5
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 4.9e-81 305.4 331 55.0
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 6.5e-81 305.1 337 49.6
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 1.9e-80 303.5 342 52.9
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 2.5e-80 303.1 313 52.4
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 2.5e-80 303.1 313 52.4
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 2.5e-80 303.1 346 50.3
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 4.2e-80 302.4 323 50.5
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 7.1e-80 301.6 326 50.0
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 9.3e-80 301.2 320 51.9
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 1.2e-79 300.8 301 56.5
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 2.7e-79 299.7 317 52.4
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 7.9e-79 298.1 330 49.1
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 1.0e-78 297.7 340 51.2
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 1.8e-78 297.0 335 49.0
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 1.5e-77 293.9 325 49.2
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 2.5e-77 293.1 327 50.8
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 3.3e-77 292.7 301 55.5
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 9.7e-77 291.2 333 51.4
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 2.8e-76 289.7 327 48.9
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 2.8e-76 289.7 322 51.6
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 1.1e-75 287.7 438 42.9
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 1.4e-75 287.3 307 55.0
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 2.4e-75 286.6 298 54.4
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 5.3e-75 285.4 331 52.0
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 1.7e-73 280.4 325 53.8
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 8.5e-73 278.1 326 49.7
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 1.4e-70 270.8 340 46.2
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 1.1e-69 267.7 371 46.9
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 3.3e-69 266.2 328 49.7
Hma1.2p1_0068F.1_g037190 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 7.7e-66 255.0 239 58.2
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 4.2e-64 249.2 309 48.5
COL.COLO4_27543 Corchorus olitorius HOM05D006361 ORTHO05D007824 4.7e-63 245.7 247 52.2
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 1.0e-62 244.6 280 50.4
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 3.7e-60 236.1 378 39.7
CsaV3_5G012340 Cucumis sativus L. HOM05D006361 ORTHO05D007824 7.7e-58 228.4 252 54.0
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 2.2e-49 200.3 423 36.4
Haze_10736 Corylus avellana HOM05D006361 ORTHO05D007824 8.8e-46 188.3 179 56.4
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 1.8e-43 180.6 229 51.1
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 3.5e-42 176.4 362 34.8
Hund12782 Selenicereus undatus HOM05D006361 ORTHO05D007824 6.1e-39 165.6 135 60.0
Mapoly0161s0009 Marchantia polymorpha HOM05D006361 ORTHO05D007824 1.2e-37 161.4 364 30.8
arahy.Tifrunner.gnm1.ann1.10LCJA Arachis hypogaea HOM05D006361 ORTHO05D007824 4.8e-36 156.0 288 39.6
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 1.7e-33 147.5 203 47.8
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 3.5e-26 123.2 147 49.0
MBI06_g04759_MAGBIO Magnolia biondii HOM05D006361 ORTHO05D007824 2.9e-25 120.2 100 63.0
CBR_g51236 Chara braunii HOM05D006361 ORTHO05D007824 1.9e-24 117.5 466 24.5
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 4.3e-24 116.3 211 38.4
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 1.6e-23 114.4 138 50.0
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 7.5e-21 105.5 74 71.6
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 9.8e-21 105.1 108 54.6
Actinidia34046 Actinidia chinensis HOM05D006361 ORTHO05D007824 2.9e-20 103.6 81 65.4
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 1.1e-19 101.7 118 50.0
SMO115G0015 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 1.2e-18 98.2 239 31.8
SMO166G0069 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 5.0e-17 92.8 233 30.0
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 1.1e-16 91.7 61 72.1
Pp3c10_230 Physcomitrium patens HOM05D006361 ORTHO05D007824 3.6e-15 86.7 250 27.6
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 3.1e-14 83.6 42 88.1
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 1.2e-13 81.6 40 90.0
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 4.1e-11 73.2 46 71.7
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.6e-10 71.2 46 73.9
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 1.6e-10 71.2 53 69.8


User provided reference genes

Program Settings