Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 5.3e-218 760.8 392 100.0
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 1.6e-169 599.7 319 98.1
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 2.8e-166 589.0 327 95.1
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 3.5e-145 518.8 329 82.7
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 1.5e-140 503.4 324 83.3
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 4.2e-138 495.4 308 82.8
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 4.6e-137 491.9 318 83.0
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 1.4e-93 347.4 334 58.4
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 6.9e-93 345.1 346 56.9
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 9.1e-93 344.7 342 57.0
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 2.0e-92 343.6 346 55.8
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 3.4e-92 342.8 335 58.5
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 1.7e-91 340.5 341 56.3
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 2.9e-91 339.7 316 60.4
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 2.9e-91 339.7 338 56.5
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 3.8e-91 339.3 314 59.9
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 2.7e-89 333.2 312 58.0
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 6.1e-89 332.0 329 56.8
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 3.0e-88 329.7 333 57.1
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 6.7e-88 328.6 336 56.0
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 1.1e-87 327.8 347 53.0
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 2.0e-87 327.0 327 58.1
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 7.4e-87 325.1 322 57.1
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 9.7e-87 324.7 348 56.9
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 9.7e-87 324.7 334 56.3
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 1.1e-85 321.2 346 55.2
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 1.1e-85 321.2 311 57.6
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 5.3e-85 318.9 339 53.4
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 1.2e-84 317.8 342 52.0
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 2.6e-84 316.6 350 53.4
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 1.0e-83 314.7 315 54.3
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 1.0e-83 314.7 321 56.4
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 2.2e-83 313.5 356 52.8
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 2.9e-83 313.2 350 52.9
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 2.9e-83 313.2 347 52.4
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 6.5e-83 312.0 343 54.2
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 6.5e-83 312.0 332 55.7
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 1.1e-82 311.2 371 48.8
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 1.9e-82 310.5 325 52.3
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 1.9e-82 310.5 349 51.6
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 2.5e-82 310.1 341 54.3
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 3.2e-82 309.7 345 52.5
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 4.2e-82 309.3 321 57.9
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 4.2e-82 309.3 321 57.9
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 4.2e-82 309.3 325 52.3
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 5.5e-82 308.9 326 52.1
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 9.4e-82 308.1 331 50.2
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.2e-81 307.8 317 56.8
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 2.1e-81 307.0 341 52.8
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 3.6e-81 306.2 318 56.9
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 8.0e-81 305.1 307 57.3
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 1.0e-80 304.7 334 49.7
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 1.4e-80 304.3 335 50.1
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.4e-80 304.3 318 57.5
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 1.4e-80 304.3 326 53.1
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 2.3e-80 303.5 309 55.3
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 4.0e-80 302.8 334 49.4
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 6.7e-80 302.0 344 52.9
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 6.7e-80 302.0 341 53.1
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 8.8e-80 301.6 342 52.6
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 2.0e-79 300.4 342 49.4
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 5.7e-79 298.9 301 56.1
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 7.5e-79 298.5 357 48.5
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 2.8e-78 296.6 338 49.1
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 6.3e-78 295.4 329 50.8
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 6.3e-78 295.4 329 50.8
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 1.4e-77 294.3 333 50.8
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 3.1e-77 293.1 340 49.1
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 4.1e-77 292.7 343 50.7
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 9.1e-77 291.6 333 50.2
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 1.2e-76 291.2 348 48.0
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 2.0e-76 290.4 301 55.1
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 2.7e-76 290.0 346 47.7
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 5.9e-76 288.9 336 50.9
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 1.0e-75 288.1 341 47.8
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 1.7e-75 287.3 326 50.6
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 6.5e-75 285.4 305 53.8
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 1.1e-74 284.6 324 48.5
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 1.9e-74 283.9 438 42.7
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 5.5e-74 282.3 323 50.5
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 4.7e-73 279.3 339 50.7
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 1.0e-72 278.1 333 50.8
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 1.8e-72 277.3 336 51.8
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 1.5e-71 274.2 326 49.1
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 9.1e-69 265.0 341 46.0
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 2.3e-67 260.4 373 45.8
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 2.3e-67 260.4 328 49.1
Hma1.2p1_0068F.1_g037190 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 1.0e-64 251.5 239 57.3
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 7.5e-63 245.4 309 47.6
COL.COLO4_27543 Corchorus olitorius HOM05D006361 ORTHO05D007824 1.7e-62 244.2 247 52.2
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 1.4e-61 241.1 282 49.6
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 5.0e-59 232.6 378 39.4
CsaV3_5G012340 Cucumis sativus L. HOM05D006361 ORTHO05D007824 4.7e-57 226.1 252 53.6
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 3.4e-47 193.4 438 35.4
Haze_10736 Corylus avellana HOM05D006361 ORTHO05D007824 2.0e-44 184.1 179 55.9
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 9.5e-42 175.3 230 50.0
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 8.1e-41 172.2 362 34.3
Hund12782 Selenicereus undatus HOM05D006361 ORTHO05D007824 9.9e-39 165.2 135 60.0
Mapoly0161s0009 Marchantia polymorpha HOM05D006361 ORTHO05D007824 3.5e-36 156.8 371 30.2
arahy.Tifrunner.gnm1.ann1.10LCJA Arachis hypogaea HOM05D006361 ORTHO05D007824 5.6e-34 149.4 288 38.5
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 5.2e-32 142.9 215 45.6
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 3.1e-24 117.1 165 44.2
MBI06_g04759_MAGBIO Magnolia biondii HOM05D006361 ORTHO05D007824 5.2e-24 116.3 100 62.0
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 5.8e-23 112.8 128 50.8
CBR_g51236 Chara braunii HOM05D006361 ORTHO05D007824 9.9e-23 112.1 467 24.2
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 1.7e-22 111.3 211 37.4
Actinidia34046 Actinidia chinensis HOM05D006361 ORTHO05D007824 2.7e-20 104.0 81 65.4
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 6.0e-20 102.8 98 54.1
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 3.0e-19 100.5 86 65.1
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 6.6e-19 99.4 118 49.2
SMO115G0015 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 5.6e-18 96.3 242 31.4
SMO166G0069 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 2.4e-16 90.9 233 30.0
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 1.2e-15 88.6 75 61.3
Pp3c10_230 Physcomitrium patens HOM05D006361 ORTHO05D007824 2.9e-14 84.0 250 27.2
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 4.2e-13 80.1 64 64.1
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 7.1e-13 79.3 66 60.6
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 1.1e-10 72.0 64 59.4
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 1.1e-10 72.0 52 63.5
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.9e-10 71.2 45 71.1


User provided reference genes

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