Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 5.5e-300 1033.5 510 100.0
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 7.3e-268 926.8 510 91.6
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 5.6e-252 874.0 510 88.0
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 5.6e-252 874.0 510 88.0
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 5.6e-252 874.0 510 88.0
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 5.6e-252 874.0 510 88.0
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 5.6e-252 874.0 510 88.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 1.2e-222 776.5 513 78.4
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 2.5e-212 742.3 510 75.7
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 1.1e-204 716.8 513 73.5
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 1.9e-204 716.1 507 72.4
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-199 699.9 514 71.8
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 1.9e-199 699.5 509 71.5
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 5.5e-199 698.0 507 71.4
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 1.8e-197 693.0 496 73.0
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 1.8e-197 693.0 496 73.0
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.5e-196 689.9 514 71.4
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.8e-194 682.9 514 71.0
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.3e-194 681.4 514 70.8
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 9.1e-194 680.6 511 69.7
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-191 673.7 514 70.2
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 7.2e-191 671.0 507 68.0
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 5.7e-188 661.4 514 68.1
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 1.6e-185 653.3 505 69.1
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.2e-184 649.4 514 68.1
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.5e-183 644.8 512 67.4
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 1.6e-182 643.3 497 69.0
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.7e-182 642.5 514 67.5
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 3.5e-177 625.5 512 66.0
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 1.0e-176 624.0 511 65.2
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 4.2e-175 618.6 510 65.3
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 4.0e-173 612.1 513 62.6
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 6.8e-173 611.3 513 62.6
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 1.2e-172 610.5 513 62.6
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 3.4e-172 609.0 513 62.8
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.8e-171 605.9 514 65.2
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 4.8e-171 605.1 510 63.9
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.8e-170 603.2 457 68.7
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 2.4e-170 602.8 447 70.5
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.3e-168 597.0 441 70.5
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.4e-164 582.4 517 64.0
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 7.5e-164 581.3 511 62.2
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 3.7e-163 578.9 511 62.6
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 3.5e-161 572.4 496 63.3
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 5.0e-160 568.5 513 61.8
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.1e-158 561.6 408 72.1
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 1.2e-156 557.4 512 59.4
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.4e-156 555.4 427 67.7
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 5.7e-156 555.1 424 69.6
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 4.9e-155 552.0 517 61.9
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 4.6e-153 545.4 473 62.2
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 1.1e-146 524.2 299 87.6
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 4.1e-146 522.3 505 57.6
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 1.1e-141 507.7 338 75.7
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.4e-141 507.3 362 76.8
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.6e-134 483.8 486 57.4
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 7.8e-129 464.9 233 97.4
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 2.6e-124 449.9 396 60.9
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.5e-119 433.3 509 51.7
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 4.3e-119 432.6 400 60.8
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.6e-116 423.3 453 54.1
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 2.2e-107 393.7 467 50.1
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 1.9e-106 390.6 294 73.8
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 5.5e-106 389.0 427 53.2
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 6.7e-104 382.1 332 62.0
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.3e-103 379.4 510 47.1
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.5e-100 370.9 292 67.1
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 1.3e-94 351.3 311 61.7
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.0e-83 315.1 170 92.9
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 5.1e-80 302.8 159 95.0
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.9e-74 284.3 270 58.1
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 1.9e-74 284.3 270 58.1
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 1.9e-74 284.3 213 65.3
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 1.9e-74 284.3 213 65.3
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 1.9e-74 284.3 213 65.3
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 1.9e-74 284.3 213 65.3
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 1.9e-74 284.3 213 65.3
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 2.5e-74 283.9 159 89.9
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 2.1e-73 280.8 471 43.9
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 9.7e-71 271.9 145 93.1
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 9.1e-69 265.4 181 72.9
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 1.2e-68 265.0 308 50.6
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.0e-67 261.9 264 57.2
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 4.7e-65 253.1 221 62.9
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.0e-64 251.9 302 51.3
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 2.7e-60 237.3 326 44.5
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 1.0e-59 235.3 122 95.9
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 7.2e-58 229.2 211 60.7
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.7e-57 226.5 120 95.0
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 8.0e-57 225.7 143 75.5
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.7e-54 216.9 151 72.2
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 5.9e-52 209.5 115 92.2
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 7.7e-52 209.1 149 71.8
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 1.6e-49 201.4 129 78.3
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.0e-48 196.8 236 47.5
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 3.7e-46 190.3 126 77.0
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 2.8e-41 174.1 164 59.1
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 2.3e-40 171.0 120 71.7
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.0e-40 170.2 191 49.2
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 6.8e-40 169.5 139 66.2
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 8.9e-40 169.1 98 85.7
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 1.2e-39 168.7 138 60.9
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 2.0e-39 167.9 143 64.3
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 3.4e-39 167.2 118 73.7
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 9.8e-39 165.6 137 67.9
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 1.7e-38 164.9 85 92.9
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.4e-37 161.8 121 68.6
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.3e-35 154.5 135 65.2
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.1e-34 152.1 134 62.7
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 2.5e-34 151.0 126 66.7
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 6.8e-32 142.9 128 54.7
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 4.4e-31 140.2 142 57.7
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 5.8e-31 139.8 173 51.4
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 7.0e-29 132.9 106 65.1
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 9.2e-29 132.5 122 60.7
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.6e-28 131.7 108 63.9
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 7.8e-28 129.4 116 56.0
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.3e-27 127.9 80 75.0
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 3.0e-27 127.5 74 81.1
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 3.9e-27 127.1 105 60.0
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.6e-27 125.9 164 47.0
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.9e-26 124.8 86 75.6
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.4e-23 113.6 407 27.0
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.3e-22 112.1 84 66.7
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 4.9e-22 110.2 396 29.0
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 6.4e-22 109.8 115 50.4
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 7.8e-20 102.8 83 63.9
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.0e-19 100.9 78 69.2
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 3.9e-19 100.5 98 54.1
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 1.5e-18 98.6 82 62.2
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 8.1e-17 92.8 65 67.7
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 2.6e-15 87.8 82 62.2
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 7.6e-15 86.3 53 84.9
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 1.3e-14 85.5 59 72.9
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 2.9e-14 84.3 84 53.6
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 1.9e-13 81.6 66 66.7
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 4.2e-13 80.5 48 77.1
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 1.6e-12 78.6 67 64.2
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.7e-12 77.8 46 71.7
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 2.5e-10 71.2 56 60.7
Solyc02g011990.1 Solanum lycopersicum HOM05D001387 ORTHO05D001250 7.3e-10 69.7 39 84.6
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 2.8e-09 67.8 59 57.6
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 4.8e-09 67.0 38 78.9
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 6.2e-09 66.6 58 60.3
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 6.2e-09 66.6 58 60.3
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 1.1e-08 65.9 46 58.7
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 1.1e-08 65.9 84 48.8
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 1.1e-08 65.9 60 61.7
TPR.G7920 Trifolium pratense HOM05D004473 ORTHO05D005652 1.1e-08 65.9 66 59.1
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 2.4e-08 64.7 42 69.0
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.5e-07 62.0 52 65.4
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 5.8e-07 60.1 35 77.1
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 5.8e-07 60.1 42 78.6
Oeu022565.1 Olea europaea HOM05D004473 ORTHO05D005652 7.6e-07 59.7 36 77.8
BolSC29t60444H Brassica oleracea HOM05D004473 ORTHO05D005652 2.9e-06 57.8 52 55.8
TPR.G16230 Trifolium pratense HOM05D004473 ORTHO05D005652 4.9e-06 57.0 78 44.9
CsaV3_4G012020 Cucumis sativus L. HOM05D003614 ORTHO05D004156 8.4e-06 56.2 105 33.3


User provided reference genes

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