Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 1.6e-101 372.9 202 100.0
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 5.3e-97 357.8 186 98.4
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 7.0e-97 357.5 202 92.6
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 8.3e-82 307.4 187 85.0
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 3.1e-81 305.4 205 82.0
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 3.1e-81 305.4 187 84.5
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 1.3e-74 283.5 189 82.0
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 2.0e-64 249.6 177 75.7
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 6.0e-64 248.1 195 69.2
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 1.0e-63 247.3 176 75.0
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 1.0e-63 247.3 163 80.4
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 1.0e-63 247.3 163 80.4
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 1.0e-63 247.3 208 67.8
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 2.3e-63 246.1 165 78.8
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 2.3e-63 246.1 190 72.1
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 2.3e-63 246.1 203 69.0
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 5.0e-63 245.0 171 79.5
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 6.6e-63 244.6 178 73.0
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 6.6e-63 244.6 179 72.6
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 8.6e-63 244.2 197 69.0
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 8.6e-63 244.2 186 73.1
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 1.1e-62 243.8 165 78.2
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 1.1e-62 243.8 192 71.4
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 1.9e-62 243.0 203 68.0
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 4.3e-62 241.9 198 68.2
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 5.6e-62 241.5 198 67.7
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 9.5e-62 240.7 210 67.1
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 9.5e-62 240.7 215 64.2
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 1.2e-61 240.4 184 68.5
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 1.2e-61 240.4 161 77.6
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 1.2e-61 240.4 198 70.2
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 1.6e-61 240.0 200 69.0
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 2.1e-61 239.6 146 80.1
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 2.1e-61 239.6 146 80.1
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 2.8e-61 239.2 166 75.9
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 2.8e-61 239.2 194 70.6
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 6.2e-61 238.0 198 68.7
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 8.0e-61 237.7 183 69.9
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.4e-60 236.9 165 76.4
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 1.8e-60 236.5 209 66.0
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 2.3e-60 236.1 165 75.8
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 4.0e-60 235.3 161 77.6
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 4.0e-60 235.3 201 65.2
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 5.2e-60 235.0 206 65.5
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 6.8e-60 234.6 185 70.3
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 6.8e-60 234.6 187 70.1
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 6.8e-60 234.6 204 63.7
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 8.9e-60 234.2 204 66.7
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 1.2e-59 233.8 165 75.2
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 1.5e-59 233.4 198 67.2
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 1.5e-59 233.4 192 69.3
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 2.6e-59 232.6 160 75.0
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 3.4e-59 232.3 162 74.7
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 5.8e-59 231.5 173 72.8
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 7.5e-59 231.1 192 68.8
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 9.8e-59 230.7 202 65.8
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 9.8e-59 230.7 203 65.5
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 9.8e-59 230.7 203 65.5
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 9.8e-59 230.7 162 73.5
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 1.3e-58 230.3 192 66.7
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 1.7e-58 229.9 185 69.2
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 1.7e-58 229.9 189 67.7
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 2.9e-58 229.2 148 77.7
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 4.9e-58 228.4 160 75.0
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 4.9e-58 228.4 173 71.1
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 8.3e-58 227.6 166 72.9
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 1.1e-57 227.3 163 71.8
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 1.4e-57 226.9 188 67.6
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 2.4e-57 226.1 163 70.6
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 3.2e-57 225.7 207 62.8
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 3.2e-57 225.7 196 64.8
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 5.4e-57 224.9 201 63.2
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 7.1e-57 224.6 194 66.0
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 2.7e-56 222.6 205 62.4
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 6.0e-56 221.5 181 67.4
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 7.8e-56 221.1 193 67.9
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 1.3e-55 220.3 166 72.3
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 1.3e-55 220.3 163 73.0
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 5.1e-55 218.4 181 67.4
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 6.6e-55 218.0 167 71.9
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 6.6e-55 218.0 140 80.7
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 1.5e-54 216.9 201 63.7
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 1.9e-54 216.5 181 65.7
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 1.9e-54 216.5 199 64.3
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 4.3e-54 215.3 134 80.6
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 5.6e-54 214.9 164 68.3
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 2.8e-53 212.6 143 76.9
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 2.8e-53 212.6 143 76.9
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 3.6e-53 212.2 143 76.9
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 1.4e-52 210.3 130 76.2
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 1.4e-52 210.3 118 84.7
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 4.0e-52 208.8 185 64.3
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 2.9e-50 202.6 184 61.4
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 3.2e-49 199.1 193 57.0
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 2.1e-48 196.4 174 64.9
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 3.5e-48 195.7 127 78.7
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 3.9e-47 192.2 193 56.0
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 7.3e-46 188.0 203 49.8
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 1.2e-45 187.2 121 72.7
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 1.2e-45 187.2 146 66.4
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 4.7e-45 185.3 133 66.9
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 1.4e-44 183.7 118 72.9
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 4.0e-44 182.2 118 73.7
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 6.8e-44 181.4 136 64.7
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 7.6e-43 177.9 143 69.2
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 1.5e-35 153.7 132 53.8
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.1e-33 147.5 193 51.8
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 3.3e-30 136.0 138 57.2
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 6.2e-21 105.1 134 36.6
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 4.2e-17 92.4 112 39.3
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 7.9e-16 88.2 110 42.7
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 3.3e-14 82.8 45 82.2
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 4.8e-13 79.0 141 31.9


User provided reference genes

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