Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 1.5e-119 433.0 227 100.0
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 1.6e-118 429.5 227 99.1
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 8.6e-112 407.1 225 96.0
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 5.8e-108 394.4 228 91.7
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.3e-107 393.3 228 91.2
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 1.3e-107 393.3 228 89.9
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 2.2e-107 392.5 228 90.8
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 2.2e-107 392.5 228 90.8
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 3.7e-107 391.7 228 90.8
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 8.3e-107 390.6 225 91.6
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.9e-106 389.4 225 90.7
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 4.1e-106 388.3 219 91.3
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 5.4e-106 387.9 231 89.6
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 1.6e-105 386.3 223 90.1
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 2.7e-105 385.6 223 91.0
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 2.7e-105 385.6 227 90.3
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 2.7e-105 385.6 226 88.1
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 3.5e-105 385.2 225 91.6
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 3.5e-105 385.2 230 87.8
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 6.0e-105 384.4 220 91.4
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 1.0e-104 383.6 224 89.7
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 3.9e-104 381.7 229 88.2
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 5.1e-104 381.3 230 87.8
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 5.1e-104 381.3 231 89.2
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 5.1e-104 381.3 224 88.4
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 6.6e-104 380.9 231 87.0
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 6.6e-104 380.9 220 90.5
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 6.6e-104 380.9 220 90.5
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.1e-103 380.2 230 87.4
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 1.1e-103 380.2 233 87.1
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.5e-103 379.8 222 89.2
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.9e-103 379.4 230 87.0
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 1.9e-103 379.4 226 87.6
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 2.5e-103 379.0 224 87.9
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 4.3e-103 378.3 231 85.7
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 4.3e-103 378.3 225 88.0
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 5.6e-103 377.9 230 87.0
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 5.6e-103 377.9 220 90.5
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 5.6e-103 377.9 218 90.4
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 7.3e-103 377.5 223 88.8
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 7.3e-103 377.5 228 86.8
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 9.6e-103 377.1 229 86.9
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 1.2e-102 376.7 227 86.8
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 2.1e-102 375.9 223 88.3
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 2.1e-102 375.9 223 88.3
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 2.1e-102 375.9 225 88.0
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 2.1e-102 375.9 227 86.8
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 2.8e-102 375.6 231 85.7
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 2.8e-102 375.6 223 87.9
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 2.8e-102 375.6 222 88.3
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 3.6e-102 375.2 231 87.4
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 6.2e-102 374.4 225 87.1
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 6.2e-102 374.4 231 85.3
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 8.1e-102 374.0 223 87.4
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 8.1e-102 374.0 223 88.8
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 1.1e-101 373.6 223 87.4
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.1e-101 373.6 218 89.0
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.1e-101 373.6 217 89.4
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 1.4e-101 373.2 220 88.2
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.8e-101 372.9 217 88.9
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 1.8e-101 372.9 223 87.0
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 1.8e-101 372.9 223 88.3
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 3.1e-101 372.1 227 87.7
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 3.1e-101 372.1 227 85.9
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 3.1e-101 372.1 226 88.5
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 4.0e-101 371.7 229 85.6
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 4.0e-101 371.7 230 86.1
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 8.9e-101 370.5 223 87.0
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 8.9e-101 370.5 220 87.7
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.2e-100 370.2 224 87.5
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 1.2e-100 370.2 223 87.0
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 1.2e-100 370.2 223 87.0
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 1.2e-100 370.2 223 87.0
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.2e-100 370.2 223 86.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.2e-100 370.2 208 91.8
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.2e-100 370.2 227 86.8
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 1.5e-100 369.8 232 84.9
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.5e-100 369.8 222 88.3
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 1.5e-100 369.8 229 86.5
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 2.0e-100 369.4 229 85.2
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 2.0e-100 369.4 224 86.2
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 2.6e-100 369.0 223 86.5
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.6e-100 369.0 225 85.8
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 4.4e-100 368.2 220 87.3
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 5.8e-100 367.9 229 83.8
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 5.8e-100 367.9 223 87.4
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 7.6e-100 367.5 229 83.8
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 7.6e-100 367.5 226 86.3
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.3e-99 366.7 224 85.7
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 2.2e-99 365.9 224 85.3
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 2.2e-99 365.9 224 85.3
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.2e-99 365.9 222 85.1
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 2.9e-99 365.5 229 83.8
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 3.8e-99 365.2 218 85.3
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 8.4e-99 364.0 225 85.3
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 8.4e-99 364.0 229 83.0
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.1e-98 363.6 224 84.4
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.1e-98 363.6 257 77.4
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.9e-98 362.8 207 90.3
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 2.4e-98 362.5 219 84.9
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 3.2e-98 362.1 208 91.3
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 4.2e-98 361.7 229 83.0
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 1.6e-97 359.8 225 84.9
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 2.7e-97 359.0 207 90.3
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 1.7e-96 356.3 206 89.8
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 3.0e-96 355.5 220 84.5
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 3.9e-96 355.1 220 82.7
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 8.7e-96 354.0 222 84.7
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 1.5e-95 353.2 220 83.2
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 1.1e-93 347.1 306 66.7
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 1.1e-93 347.1 219 80.8
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 2.4e-93 345.9 222 82.4
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 1.3e-88 330.1 190 91.1
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 5.1e-88 328.2 230 78.7
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 1.7e-83 313.2 206 79.1
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 4.9e-83 311.6 214 74.3
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 7.9e-81 304.3 225 71.6
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 5.1e-80 301.6 190 86.8
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 4.8e-78 295.0 179 89.4
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 3.1e-77 292.4 212 73.1
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 8.4e-75 284.3 194 82.5
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 4.6e-73 278.5 163 91.4
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 7.9e-73 277.7 158 91.1
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 5.1e-72 275.0 159 90.6
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 5.1e-72 275.0 173 82.1
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 8.7e-72 274.2 157 90.4
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 1.9e-71 273.1 155 91.6
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.3e-70 270.4 166 88.0
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.8e-69 266.5 179 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.6e-68 261.2 183 75.4
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 1.6e-65 253.4 161 84.5
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 1.3e-59 233.8 158 75.9
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.8e-53 213.4 124 89.5
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 7.2e-50 201.4 175 66.9
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 5.7e-47 191.8 103 100.0
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.2e-43 179.9 110 87.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 1.1e-39 167.5 94 94.7
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.8e-35 152.5 155 56.8
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 6.1e-33 145.2 88 87.5
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 2.7e-28 129.8 76 82.9
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 3.2e-26 122.9 205 38.5
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 8.8e-24 114.8 78 78.2
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.8e-22 109.8 57 93.0
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 3.6e-17 92.8 62 77.4
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.8e-16 90.5 66 71.2
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 2.9e-14 83.2 60 70.0
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 1.5e-10 70.9 46 76.1


User provided reference genes

Program Settings