Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 0.0e+00 1174.5 596 100.0
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 0.0e+00 1162.9 596 99.2
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 0.0e+00 1085.1 598 92.3
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.3e-304 1047.7 605 86.9
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.8e-295 1018.1 585 87.9
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 8.2e-271 936.8 589 82.0
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.8e-241 839.3 597 71.4
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.8e-238 829.3 589 70.8
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.6e-232 808.9 591 69.2
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 4.9e-231 804.7 596 68.5
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.7e-228 796.2 592 68.9
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 2.8e-226 788.9 595 68.7
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.2e-224 783.5 591 68.4
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 3.4e-224 781.9 590 67.8
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 9.8e-224 780.4 591 67.9
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.3e-220 770.0 587 66.4
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 3.0e-220 768.8 591 65.7
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 3.0e-220 768.8 596 66.4
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.9e-219 766.1 600 66.5
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.9e-219 766.1 598 67.1
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.2e-218 763.5 596 65.8
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 3.4e-216 755.4 587 65.6
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.3e-215 753.4 617 62.9
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 4.6e-213 745.0 593 63.6
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 7.8e-213 744.2 598 64.9
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.4e-209 733.4 617 64.0
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 3.1e-209 732.3 598 62.7
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.0e-209 731.9 590 64.7
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 5.2e-209 731.5 599 64.3
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 1.5e-208 729.9 590 63.1
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.5e-208 729.9 590 64.4
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 2.0e-208 729.6 588 63.9
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.7e-207 726.5 590 64.2
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 1.7e-207 726.5 580 64.1
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 8.4e-207 724.2 597 64.0
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 7.1e-206 721.1 592 63.5
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 9.2e-206 720.7 574 63.9
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 9.2e-206 720.7 585 62.2
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.6e-205 719.9 586 63.3
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 2.5e-203 712.6 576 61.1
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 9.6e-203 710.7 603 61.0
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 2.1e-202 709.5 585 60.9
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.8e-202 709.1 598 62.4
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 6.2e-202 708.0 598 62.2
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.4e-201 706.8 597 62.8
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 2.4e-201 706.1 519 68.6
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 4.0e-201 705.3 593 61.0
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 6.9e-201 704.5 522 68.0
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 9.0e-201 704.1 599 60.6
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 2.6e-200 702.6 600 61.2
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.6e-200 702.6 597 60.3
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.6e-200 702.6 579 61.7
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 7.6e-200 701.0 599 60.1
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 9.9e-200 700.7 597 62.3
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.7e-199 699.9 573 61.8
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 2.2e-199 699.5 594 59.6
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.9e-199 699.1 597 62.3
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 4.2e-198 695.3 512 67.4
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 3.5e-197 692.2 596 60.9
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 6.0e-197 691.4 608 57.6
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 3.0e-196 689.1 597 60.8
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 3.9e-196 688.7 596 61.2
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 3.9e-196 688.7 594 59.9
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 5.1e-196 688.3 599 58.6
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.5e-195 686.8 599 58.9
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.9e-195 686.4 593 61.9
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 3.3e-195 685.6 596 58.2
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 4.3e-195 685.3 596 58.4
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 4.3e-195 685.3 598 60.5
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.6e-194 683.3 596 58.1
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.6e-194 683.3 590 60.8
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 2.8e-194 682.6 584 59.2
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.4e-193 680.2 596 58.2
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 3.1e-193 679.1 783 49.3
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 4.0e-193 678.7 600 57.7
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.2e-192 677.2 600 57.3
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 2.0e-192 676.4 646 57.0
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 3.4e-192 675.6 609 58.1
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.3e-191 673.7 620 60.2
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.1e-189 666.4 578 59.2
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 6.0e-189 664.8 579 59.9
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.3e-186 657.1 589 58.7
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 2.8e-186 656.0 576 58.3
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 8.1e-186 654.4 577 58.2
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 2.5e-182 642.9 522 61.1
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 8.2e-178 627.9 564 59.4
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.6e-176 622.9 484 64.5
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.3e-175 620.5 559 57.8
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 7.9e-173 611.3 576 55.6
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 4.3e-171 605.5 525 59.2
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.8e-164 583.6 593 52.3
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.9e-164 582.4 594 53.2
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.8e-162 576.2 619 52.2
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 2.5e-158 563.1 603 48.1
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.5e-155 553.9 356 76.4
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 2.0e-155 553.5 476 62.0
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.7e-154 550.4 614 51.0
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.2e-125 454.5 447 52.8
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 7.3e-118 428.7 373 59.0
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 3.6e-117 426.4 505 45.0
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 4.4e-115 419.5 563 42.3
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 9.8e-115 418.3 303 70.0
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.1e-110 404.8 550 40.9
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 4.3e-110 402.9 568 40.1
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 1.2e-104 384.8 371 54.2
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 3.4e-91 340.1 181 98.3
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.2e-83 315.1 283 60.1
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 6.6e-79 299.3 216 69.9
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 6.9e-76 289.3 216 70.4
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.9e-76 289.3 413 41.6
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 3.4e-75 287.0 293 51.2
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 4.2e-73 280.0 590 31.7
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.6e-70 269.6 317 43.8
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 5.8e-67 259.6 358 36.6
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.1e-49 202.2 172 62.8
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.0e-38 164.9 123 61.8
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 3.7e-37 160.6 112 70.5
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.1e-36 159.1 122 67.2
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.2e-31 140.2 114 61.4
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.8e-28 131.7 115 56.5
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.1e-28 131.0 251 36.3
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 7.7e-27 126.3 105 57.1
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.2e-26 124.8 75 80.0
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.8e-23 115.2 371 27.8
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 4.0e-23 114.0 77 64.9
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 8.8e-23 112.8 115 48.7
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.2e-22 112.5 354 24.6
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.5e-22 112.1 181 39.8
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.5e-22 112.1 116 48.3
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.3e-21 109.0 98 51.0
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.1e-20 105.9 137 44.5
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.1e-20 105.9 189 36.0
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 6.5e-18 96.7 128 36.7
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 1.3e-13 82.4 107 38.3
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 5.4e-12 77.0 153 35.9
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 7.0e-12 76.6 234 28.2
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 2.0e-11 75.1 138 37.7
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 7.7e-11 73.2 60 58.3
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 1.7e-10 72.0 83 47.0
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 1.5e-09 68.9 58 62.1
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 6.1e-08 63.5 82 47.6
Oeu032047.1 Olea europaea HOM05D005072 ORTHO05D006209 9.8e-06 56.2 74 44.6


User provided reference genes

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