Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.5e-133 478.8 239 100.0
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.6e-132 476.1 239 99.6
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 5.5e-117 424.5 245 87.8
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.4e-91 340.1 244 71.3
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.3e-91 339.3 243 71.6
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.2e-84 317.0 247 68.0
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 2.1e-84 316.2 247 68.0
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.8e-84 315.8 247 67.6
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.4e-82 308.9 243 66.3
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 2.7e-79 299.3 244 65.6
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 5.9e-79 298.1 241 65.1
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.3e-78 297.0 251 63.7
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.5e-77 293.5 216 69.4
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 9.5e-77 290.8 257 62.6
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.2e-74 283.9 239 62.8
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.5e-74 283.5 247 60.7
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 7.5e-74 281.2 251 61.4
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 9.8e-74 280.8 247 63.2
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 9.8e-74 280.8 250 60.0
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 8.3e-73 277.7 240 60.8
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 8.3e-73 277.7 243 60.5
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.1e-72 277.3 250 60.0
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 4.1e-72 275.4 249 61.8
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.2e-71 273.9 242 59.9
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.6e-71 273.5 252 60.3
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 7.8e-71 271.2 241 60.6
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 7.8e-71 271.2 254 59.8
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.0e-70 270.8 245 60.0
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 3.0e-70 269.2 207 65.7
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.5e-69 266.9 247 59.5
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.5e-69 266.2 254 57.5
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 7.3e-69 264.6 244 61.5
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 9.5e-69 264.2 271 57.9
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 4.7e-68 261.9 232 62.1
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 8.0e-68 261.2 249 59.0
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.1e-67 260.8 246 61.0
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.8e-67 260.0 255 58.0
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 3.1e-67 259.2 206 65.5
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 3.1e-67 259.2 274 52.9
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.1e-67 259.2 266 57.1
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.2e-66 257.3 244 59.8
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.2e-66 257.3 237 60.3
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 2.0e-66 256.5 245 56.7
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 2.0e-66 256.5 242 59.1
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.6e-66 256.1 244 59.8
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 3.4e-66 255.8 193 68.9
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.4e-66 255.8 251 56.2
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 4.4e-66 255.4 266 53.8
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 4.4e-66 255.4 228 59.6
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 4.4e-66 255.4 244 59.4
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 4.4e-66 255.4 236 59.3
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 7.5e-66 254.6 246 59.3
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 7.5e-66 254.6 241 58.1
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 4.9e-65 251.9 223 59.6
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 6.4e-65 251.5 245 59.2
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 8.3e-65 251.1 228 59.2
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.2e-64 249.2 228 58.8
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 5.4e-64 248.4 253 56.1
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 7.0e-64 248.1 237 57.4
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 9.2e-64 247.7 183 68.3
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.2e-63 247.3 248 56.0
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.7e-63 246.1 218 61.0
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.5e-63 245.7 246 57.3
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 4.6e-63 245.4 250 54.0
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 4.6e-63 245.4 264 53.0
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.0e-62 244.2 224 58.5
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.3e-62 243.0 243 56.8
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.3e-62 243.0 222 59.9
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 3.0e-62 242.7 257 52.5
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.9e-62 242.3 246 56.5
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.5e-61 240.4 205 62.9
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.5e-61 240.4 285 51.2
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.5e-61 240.4 264 50.4
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.6e-60 236.9 215 57.2
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 6.2e-60 235.0 205 61.5
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.1e-59 232.6 216 56.9
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.1e-59 232.6 247 53.8
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 4.0e-59 232.3 237 56.5
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 5.2e-59 231.9 257 49.8
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.2e-58 230.7 304 46.1
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.6e-58 229.6 261 50.2
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 4.4e-58 228.8 219 57.1
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 5.8e-58 228.4 251 52.2
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 1.7e-57 226.9 257 53.3
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.7e-57 226.9 247 54.7
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 2.2e-57 226.5 258 51.2
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 2.2e-57 226.5 241 53.9
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 2.2e-57 226.5 241 53.9
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 5.4e-56 221.9 233 54.5
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 4.6e-55 218.8 259 49.8
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 6.0e-55 218.4 215 55.8
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 6.0e-55 218.4 253 50.6
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 7.8e-55 218.0 177 65.5
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.0e-54 217.6 259 49.4
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.3e-54 217.2 230 54.8
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.7e-54 216.9 178 63.5
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 1.7e-54 216.9 250 52.0
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.7e-54 216.9 209 56.5
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 2.3e-54 216.5 259 49.4
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 2.3e-54 216.5 259 49.4
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 8.6e-54 214.5 260 50.0
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 1.1e-53 214.2 203 58.1
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.5e-53 213.0 217 53.9
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 3.3e-53 212.6 231 51.1
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 4.3e-53 212.2 231 50.2
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 9.5e-53 211.1 216 53.2
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.4e-51 207.2 252 50.8
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 3.1e-51 206.1 214 53.3
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.5e-50 203.8 201 52.2
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 2.6e-50 203.0 176 62.5
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 2.6e-50 203.0 176 59.7
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 8.4e-49 198.0 212 49.1
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 2.4e-48 196.4 226 50.9
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 2.4e-48 196.4 238 52.1
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 4.1e-48 195.7 256 48.0
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-47 194.1 273 45.1
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 2.7e-47 193.0 274 42.0
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.7e-47 193.0 225 50.2
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 4.6e-47 192.2 196 54.6
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 3.9e-46 189.1 254 46.9
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.5e-45 187.2 167 56.3
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 2.5e-45 186.4 186 53.2
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 3.3e-45 186.0 258 44.6
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.2e-44 184.1 209 49.8
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 1.2e-44 184.1 236 47.9
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 8.1e-44 181.4 173 56.6
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.0e-43 179.1 195 51.8
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.5e-42 177.2 224 45.5
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 3.4e-42 176.0 134 61.2
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.2e-41 173.3 176 54.0
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.9e-41 172.9 197 51.3
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.8e-41 172.6 119 69.7
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 5.4e-40 168.7 212 43.9
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.0e-38 164.5 176 54.0
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 3.3e-37 159.5 191 49.7
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 9.6e-37 157.9 248 40.7
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 9.0e-35 151.4 136 62.5
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.9e-33 145.6 100 72.0
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.5e-31 139.4 127 56.7
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 4.6e-31 139.0 163 44.8
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 1.1e-29 134.4 136 60.3
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.9e-29 133.7 143 51.7
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 5.6e-29 132.1 138 58.0
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.3e-28 131.0 160 51.2
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 1.4e-27 127.5 110 55.5
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 9.0e-27 124.8 134 56.0
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.5e-26 122.5 138 55.8
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 3.5e-23 112.8 60 78.3
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.0e-22 111.3 156 48.7
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 6.7e-22 108.6 113 55.8
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.9e-21 107.1 239 38.9
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 4.3e-21 105.9 158 39.2
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 9.6e-21 104.8 148 46.6
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 9.6e-21 104.8 275 33.8
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 4.0e-19 99.4 147 46.3
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 7.6e-18 95.1 95 49.5
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.0e-17 94.7 117 42.7
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.5e-15 86.3 71 64.8
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 1.0e-14 84.7 97 54.6
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 5.1e-14 82.4 135 42.2
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 4.3e-13 79.3 84 56.0
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 3.7e-12 76.3 52 61.5
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 6.9e-11 72.0 109 43.1
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 6.9e-11 72.0 101 42.6
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 6.9e-11 72.0 110 40.9
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 3.8e-09 66.2 82 45.1
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 8.5e-09 65.1 71 47.9
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.9e-08 63.9 50 54.0
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 4.2e-08 62.8 65 52.3
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 3.6e-07 59.7 59 44.1
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 4.6e-07 59.3 71 46.5
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 3.9e-06 56.2 88 40.9
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 5.1e-06 55.8 66 37.9
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 6.7e-06 55.5 88 39.8
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 8.8e-06 55.1 34 64.7


User provided reference genes

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