Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 7.4e-161 570.5 287 100.0
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 3.1e-159 565.1 287 99.0
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 1.1e-148 530.0 291 92.1
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 4.6e-102 375.2 267 76.4
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 1.9e-100 369.8 300 68.0
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 5.1e-85 318.5 260 63.1
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 5.8e-81 305.1 279 58.8
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 1.1e-79 300.8 268 60.8
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 5.5e-79 298.5 320 52.8
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 4.6e-78 295.4 211 69.2
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 7.9e-78 294.7 257 59.9
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 1.3e-77 293.9 286 58.7
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 2.3e-77 293.1 289 55.4
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 6.7e-77 291.6 254 60.2
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 7.4e-76 288.1 288 57.3
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 9.6e-76 287.7 223 66.8
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.3e-75 287.3 218 67.0
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 2.1e-75 286.6 274 59.9
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 7.6e-73 278.1 255 62.0
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 1.0e-72 277.7 224 63.8
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 1.3e-72 277.3 274 56.2
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 2.2e-72 276.6 280 55.7
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.9e-72 276.2 226 64.6
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 6.5e-72 275.0 226 64.2
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.1e-71 274.2 226 63.7
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 1.4e-71 273.9 271 55.7
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 1.9e-71 273.5 250 59.2
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 9.3e-71 271.2 274 56.2
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 4.6e-70 268.9 216 64.4
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 6.0e-70 268.5 212 65.1
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 2.3e-69 266.5 242 57.9
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 3.9e-69 265.8 227 61.7
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 5.1e-69 265.4 275 53.8
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 5.1e-69 265.4 284 53.9
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 1.1e-68 264.2 272 55.5
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 4.3e-68 262.3 214 61.7
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 4.3e-68 262.3 269 55.8
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 1.3e-67 260.8 286 53.1
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 1.3e-67 260.8 209 64.1
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 1.6e-67 260.4 177 70.6
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 2.2e-67 260.0 212 62.7
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 4.8e-67 258.8 224 60.3
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 4.8e-67 258.8 211 63.5
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 4.8e-67 258.8 274 54.0
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 4.8e-67 258.8 256 55.5
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 4.8e-67 258.8 248 57.7
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 4.8e-67 258.8 248 57.7
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 1.4e-66 257.3 171 81.9
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 5.3e-66 255.4 194 67.0
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 5.3e-66 255.4 245 55.5
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 5.3e-66 255.4 207 61.8
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 6.9e-66 255.0 274 52.9
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 1.2e-65 254.2 199 64.8
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 1.2e-65 254.2 282 51.8
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 1.5e-65 253.8 279 52.3
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 2.0e-65 253.4 194 65.5
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 2.6e-65 253.1 273 55.7
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 2.6e-65 253.1 257 56.0
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 5.9e-65 251.9 203 60.6
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 5.9e-65 251.9 206 61.7
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 5.9e-65 251.9 245 57.6
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 7.7e-65 251.5 226 58.4
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 1.0e-64 251.1 259 55.6
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 1.0e-64 251.1 225 60.0
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 2.9e-64 249.6 343 47.5
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 3.8e-64 249.2 270 53.3
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 5.0e-64 248.8 279 52.3
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 8.5e-64 248.1 274 52.2
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 1.1e-63 247.7 267 55.1
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 3.2e-63 246.1 264 53.0
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 9.4e-63 244.6 221 57.9
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 4.6e-62 242.3 220 57.7
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 6.1e-62 241.9 197 64.0
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 6.1e-62 241.9 261 52.5
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 1.0e-61 241.1 262 52.3
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 1.4e-61 240.7 238 53.8
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 1.8e-61 240.4 197 63.5
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 1.8e-61 240.4 197 63.5
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 5.1e-61 238.8 169 69.2
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 6.7e-61 238.4 200 62.0
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 9.7e-60 234.6 253 53.8
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 1.3e-59 234.2 198 60.6
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 1.3e-59 234.2 198 60.6
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 3.7e-59 232.6 200 61.5
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 1.1e-58 231.1 424 39.2
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 1.8e-58 230.3 199 60.8
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 3.1e-58 229.6 199 60.3
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 3.1e-58 229.6 168 68.5
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 3.2e-55 219.5 197 54.8
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 9.4e-55 218.0 197 54.8
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 9.7e-52 208.0 252 48.0
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 2.2e-48 196.8 176 58.5
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 4.7e-46 189.1 196 50.0
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 1.4e-45 187.6 239 49.0
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 3.3e-44 183.0 271 46.1
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 3.1e-42 176.4 158 51.3
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 5.3e-42 175.6 165 56.4
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 2.9e-40 169.9 91 89.0
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 5.0e-40 169.1 167 48.5
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 2.1e-38 163.7 161 49.1
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 2.1e-38 163.7 273 42.9
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 7.7e-33 145.2 185 47.0
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 3.4e-28 129.8 160 41.9
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 1.8e-26 124.0 137 49.6
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 1.0e-24 118.2 163 42.3
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 1.0e-24 118.2 144 52.1
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 1.0e-21 108.2 264 34.1
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 5.2e-21 105.9 134 51.5
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.3e-16 91.3 160 37.5
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.1e-15 88.2 124 43.5
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 3.6e-14 83.2 174 36.8
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 6.4e-11 72.4 84 51.2
Oeu027210.1 Olea europaea HOM05D002956 ORTHO05D009000 6.4e-11 72.4 127 39.4
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 1.9e-10 70.9 123 38.2
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 7.0e-10 68.9 122 41.0
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 1.2e-09 68.2 81 44.4
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 8.0e-06 55.5 65 41.5


User provided reference genes

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