Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 2.9e-67 258.5 131 100.0
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 4.9e-43 177.9 108 88.0
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 4.9e-43 177.9 108 88.0
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 4.2e-42 174.9 108 87.0
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 7.1e-42 174.1 103 84.5
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.1e-41 172.6 108 80.6
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 4.6e-41 171.4 108 80.6
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 6.0e-41 171.0 108 79.6
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 9.6e-39 163.7 108 75.0
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.3e-38 163.3 108 76.9
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.3e-38 163.3 108 76.9
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 2.8e-38 162.2 108 74.1
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.8e-38 162.2 103 75.7
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 6.2e-38 161.0 108 75.0
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 8.1e-38 160.6 108 72.2
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.1e-37 160.2 103 75.7
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 1.4e-37 159.8 108 72.2
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.8e-37 159.5 108 74.1
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.8e-37 159.5 108 72.2
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.8e-37 159.5 108 73.1
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 1.8e-37 159.5 108 73.1
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 1.8e-37 159.5 108 72.2
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 2.4e-37 159.1 108 74.1
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 2.4e-37 159.1 108 71.3
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 3.1e-37 158.7 108 73.1
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 3.1e-37 158.7 108 73.1
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 3.1e-37 158.7 108 73.1
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 4.0e-37 158.3 108 72.2
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 4.0e-37 158.3 108 73.1
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 4.0e-37 158.3 108 73.1
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 6.9e-37 157.5 108 73.1
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.2e-36 156.8 108 71.3
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.2e-36 156.8 108 73.1
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.5e-36 156.4 108 72.2
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.6e-36 155.6 108 75.9
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 2.6e-36 155.6 108 72.2
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 2.6e-36 155.6 108 72.2
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 3.4e-36 155.2 108 72.2
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 3.4e-36 155.2 108 74.1
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 3.4e-36 155.2 103 74.8
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 4.4e-36 154.8 108 71.3
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 4.4e-36 154.8 108 72.2
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 5.8e-36 154.5 108 70.4
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 5.8e-36 154.5 106 68.9
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 1.3e-35 153.3 108 69.4
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 1.3e-35 153.3 108 74.1
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.3e-35 153.3 100 75.0
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 1.7e-35 152.9 108 70.4
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.9e-35 152.1 108 72.2
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 4.9e-35 151.4 108 71.3
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 4.9e-35 151.4 108 71.3
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 4.9e-35 151.4 108 71.3
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 4.9e-35 151.4 108 70.4
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 4.9e-35 151.4 116 64.7
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 6.4e-35 151.0 108 71.3
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 6.4e-35 151.0 108 70.4
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 8.4e-35 150.6 107 70.1
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 8.4e-35 150.6 116 64.7
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 1.1e-34 150.2 107 70.1
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.4e-34 149.8 108 67.6
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.4e-34 149.8 108 68.5
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 1.4e-34 149.8 107 68.2
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 1.4e-34 149.8 107 68.2
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 1.9e-34 149.4 107 68.2
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 1.9e-34 149.4 107 68.2
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.9e-34 149.4 108 67.6
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 2.4e-34 149.1 108 67.6
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 2.4e-34 149.1 108 67.6
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 2.4e-34 149.1 108 67.6
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 2.4e-34 149.1 103 71.8
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 2.4e-34 149.1 108 68.5
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.4e-34 149.1 108 68.5
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 3.2e-34 148.7 108 66.7
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 7.1e-34 147.5 108 67.6
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 1.2e-33 146.7 108 65.7
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.2e-33 146.7 108 67.6
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-33 146.7 108 67.6
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-33 146.7 108 67.6
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-33 146.7 108 67.6
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 1.6e-33 146.4 108 69.4
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 1.6e-33 146.4 103 68.9
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.1e-33 146.0 109 71.6
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 2.1e-33 146.0 108 71.3
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 2.1e-33 146.0 108 67.6
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 2.7e-33 145.6 108 68.5
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 3.5e-33 145.2 108 69.4
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 3.5e-33 145.2 101 71.3
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 4.6e-33 144.8 108 66.7
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 6.0e-33 144.4 108 70.4
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 6.0e-33 144.4 108 66.7
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 6.0e-33 144.4 103 68.0
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 7.9e-33 144.1 107 66.4
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 7.9e-33 144.1 108 66.7
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 7.9e-33 144.1 108 66.7
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 1.0e-32 143.7 108 65.7
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.3e-32 143.3 108 67.6
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 1.3e-32 143.3 108 65.7
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 3.0e-32 142.1 108 67.6
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.9e-32 141.7 103 67.0
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 3.9e-32 141.7 108 69.4
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 1.5e-31 139.8 105 64.8
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 2.5e-31 139.0 108 64.8
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 3.3e-31 138.7 108 68.5
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 4.3e-31 138.3 105 69.5
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 1.3e-30 136.7 103 62.1
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 3.6e-30 135.2 99 68.7
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 6.2e-30 134.4 108 66.7
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 6.2e-30 134.4 103 65.0
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 1.4e-29 133.3 108 67.6
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 5.3e-29 131.3 108 65.7
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 9.0e-29 130.6 108 63.9
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.2e-28 130.2 108 63.0
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.5e-28 129.8 108 65.7
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 1.5e-28 129.8 108 65.7
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 2.0e-28 129.4 93 67.7
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 5.8e-28 127.9 108 62.0
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 1.1e-26 123.6 108 62.0
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 7.1e-26 120.9 96 63.5
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 9.3e-26 120.6 109 59.6
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 4.6e-25 118.2 87 67.8
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 7.9e-25 117.5 96 62.5
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 3.0e-24 115.5 108 60.2
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 3.3e-23 112.1 107 58.9
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 5.6e-23 111.3 108 60.2
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 2.1e-22 109.4 118 53.4
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 2.1e-22 109.4 108 57.4
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 6.2e-22 107.8 108 55.6
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 8.1e-22 107.5 108 57.4
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 1.4e-21 106.7 109 48.6
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 6.9e-21 104.4 108 54.6
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 1.5e-20 103.2 108 53.7
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 3.4e-20 102.1 119 47.1
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 7.6e-20 100.9 114 46.5
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 2.2e-19 99.4 109 49.5
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.1e-18 97.1 119 44.5
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 1.0e-16 90.5 123 46.3
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 8.2e-14 80.9 79 51.9
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 8.2e-14 80.9 63 66.7
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 2.6e-12 75.9 88 43.2


User provided reference genes

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