Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1855.1 928 100.0
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1838.2 928 97.6
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1569.7 962 82.2
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 0.0e+00 1445.6 938 78.9
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 0.0e+00 1382.1 870 81.0
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1259.6 942 67.2
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1255.4 943 66.7
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1235.3 941 66.3
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1220.7 932 65.6
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1219.5 955 65.2
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1214.9 934 65.8
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1214.1 953 64.4
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1210.7 934 65.2
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1199.5 944 65.9
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1194.9 930 65.8
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1189.5 957 63.1
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1181.8 969 62.6
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1177.5 932 64.3
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1175.2 942 64.1
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1174.5 936 64.2
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1173.7 987 62.1
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1170.2 989 62.5
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1167.9 961 62.1
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1166.0 940 63.5
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1166.0 937 63.3
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1163.7 979 62.1
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1163.7 928 63.5
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1163.3 967 61.7
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1159.8 956 63.0
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1158.3 988 61.2
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1157.5 945 62.4
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1157.1 953 62.9
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1154.0 936 63.0
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1153.7 940 62.3
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1152.9 966 62.3
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1151.3 935 62.1
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1151.0 946 63.1
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1151.0 923 64.5
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1151.0 929 62.9
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1149.4 928 63.4
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1148.7 941 62.6
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1147.5 919 62.5
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1146.0 933 62.8
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1145.6 955 61.5
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1144.8 929 63.5
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1144.4 952 61.6
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1143.6 939 61.4
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1142.5 916 63.0
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1141.3 929 63.0
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1138.6 914 63.3
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1135.2 937 62.3
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1131.7 939 62.4
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1130.2 1001 59.5
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1128.6 949 62.1
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1128.2 1001 59.3
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1127.9 920 62.9
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1125.9 1001 59.2
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1124.0 971 60.2
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1120.9 934 61.8
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1119.8 940 63.0
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1119.8 955 60.2
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1117.8 941 61.8
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1114.0 1025 56.7
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1114.0 933 61.1
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1110.5 939 60.3
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1106.7 925 60.4
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1103.2 934 60.7
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1103.2 930 60.3
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1102.0 946 59.6
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1101.3 954 60.3
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1098.2 1056 57.3
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 948 59.7
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 954 59.6
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1097.0 948 59.0
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1097.0 932 60.4
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 928 60.1
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1090.9 935 59.3
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1090.9 935 59.3
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1089.3 927 61.5
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 938 61.9
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1083.2 921 60.5
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1078.5 936 58.8
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1077.4 895 62.0
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 0.0e+00 1077.0 932 60.7
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 0.0e+00 1077.0 933 61.1
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1076.6 1029 56.7
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1075.8 942 59.2
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 1.9e-311 1072.4 941 59.1
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 2.5e-311 1072.0 935 59.3
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 2.5e-311 1072.0 935 59.3
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 2.8e-310 1068.5 933 58.7
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.8e-309 1065.8 958 57.6
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 6.9e-309 1063.9 872 62.8
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 1.2e-308 1063.1 1044 56.7
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 3.2e-306 1055.0 718 76.3
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 5.5e-306 1054.3 923 58.6
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 8.2e-302 1040.4 918 59.2
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 8.2e-302 1040.4 917 58.1
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 1.2e-300 1036.6 1064 53.7
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 3.9e-296 1021.5 958 56.8
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 8.8e-296 1020.4 950 57.5
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 7.0e-293 1010.7 946 56.6
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.0e-292 1009.2 934 57.3
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.3e-291 1006.5 850 62.0
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 1.2e-289 1000.0 821 62.4
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 4.7e-289 998.0 927 57.8
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.8e-288 996.1 965 55.8
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 2.3e-288 995.7 860 60.9
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 1.5e-287 993.0 1172 48.7
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 3.1e-285 985.3 961 55.2
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 4.5e-284 981.5 1052 51.6
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 3.8e-283 978.4 822 61.3
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.0e-267 927.2 929 53.8
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 6.0e-260 901.4 951 52.9
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.2e-257 893.6 764 61.9
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 1.8e-248 863.2 841 53.3
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 4.0e-248 862.1 939 49.2
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.6e-244 850.1 763 57.3
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 2.9e-238 829.3 902 49.4
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.1e-234 817.4 697 61.8
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.1e-232 809.3 1069 43.9
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 7.9e-196 688.3 638 57.1
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 2.8e-193 679.9 628 58.1
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 4.8e-193 679.1 414 79.2
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.5e-189 666.8 668 55.8
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 3.8e-182 642.9 760 49.3
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.7e-162 575.9 409 70.9
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.8e-161 572.8 355 78.0
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 2.9e-158 563.5 389 72.8
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 9.8e-138 495.4 487 56.5
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 7.3e-133 479.2 577 49.4
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.3e-126 458.4 291 74.2
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.6e-124 450.3 714 40.9
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 1.9e-120 438.0 294 70.1
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.1e-119 434.5 559 45.8
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.5e-117 427.6 293 71.0
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.1e-116 424.5 323 64.7
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.1e-104 385.6 485 45.8
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 3.5e-103 380.6 341 56.6
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 9.3e-88 329.3 218 73.9
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.4e-54 219.2 148 66.9
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.1e-51 209.5 153 67.3
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 3.5e-50 204.5 210 46.7
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 9.8e-45 186.4 121 71.1
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 8.6e-41 173.3 132 62.1
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.7e-33 149.1 160 46.2
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 5.2e-30 137.5 76 84.2
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 5.2e-30 137.5 107 64.5
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 3.5e-26 124.8 111 52.3
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.5e-26 124.8 284 40.5
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.1e-22 113.2 86 59.3
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 8.6e-17 93.6 66 62.1
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.7e-15 87.8 82 56.1
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.8e-14 85.9 164 36.0
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.3e-14 85.5 57 70.2
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 4.4e-13 81.3 52 71.2
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 8.4e-12 77.0 136 33.1
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 2.4e-11 75.5 90 47.8
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 2.3e-09 68.9 68 51.5
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.9e-09 68.2 50 60.0
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 5.1e-09 67.8 62 54.8
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 1.1e-08 66.6 55 54.5
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.1e-08 66.6 55 54.5
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 4.3e-08 64.7 53 54.7
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 1.2e-07 63.2 33 75.8
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.8e-07 62.0 52 59.6
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.2e-06 57.8 71 46.5
BcaB04g18222 Brassica carinata HOM05D010251 ORTHO05D090319 6.8e-06 57.4 88 37.5


User provided reference genes

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