Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 5.0e-221 770.8 381 100.0
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 4.8e-216 754.2 381 97.9
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 1.0e-210 736.5 379 94.7
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 4.7e-195 684.5 381 87.7
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.6e-193 678.7 381 87.1
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 1.2e-166 590.1 358 79.6
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 3.5e-166 588.6 357 79.0
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.1e-159 567.0 357 75.9
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 9.2e-159 563.9 391 70.6
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 2.1e-158 562.8 354 78.8
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 6.6e-157 557.8 364 72.8
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.1e-156 557.0 361 74.0
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 5.6e-156 554.7 361 74.5
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 4.7e-155 551.6 380 71.3
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 6.2e-155 551.2 362 71.5
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 8.1e-155 550.8 361 72.0
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.1e-154 550.4 387 68.7
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 1.8e-154 549.7 361 72.3
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.4e-154 549.3 366 71.9
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 6.9e-154 547.7 341 76.5
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.0e-154 547.4 366 71.6
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.4e-153 545.4 366 71.6
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.3e-152 543.5 364 70.9
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 2.2e-152 542.7 359 73.5
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 3.8e-152 542.0 354 73.7
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 6.4e-152 541.2 387 69.0
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.4e-151 540.0 362 70.4
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 2.4e-151 539.3 359 71.6
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 3.2e-151 538.9 364 69.2
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 5.4e-151 538.1 363 71.3
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 9.3e-151 537.3 357 71.4
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 9.3e-151 537.3 380 68.7
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.2e-150 537.0 365 70.4
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 2.1e-150 536.2 363 70.0
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.1e-150 536.2 364 70.1
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.7e-150 535.8 368 70.7
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 3.5e-150 535.4 361 70.9
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 3.5e-150 535.4 361 72.0
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 3.5e-150 535.4 364 70.1
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 7.8e-150 534.3 361 70.4
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.3e-149 533.5 359 69.9
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.3e-149 533.5 363 70.8
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 3.9e-149 531.9 362 69.1
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 3.9e-149 531.9 360 70.8
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.7e-149 530.8 358 70.9
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.9e-148 529.6 390 66.2
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 2.5e-148 529.3 378 68.3
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 2.5e-148 529.3 363 68.3
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 5.6e-148 528.1 365 69.0
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.3e-147 526.9 340 73.8
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.3e-147 526.9 363 68.3
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.3e-147 526.9 362 70.2
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.8e-147 525.8 385 66.8
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.8e-147 525.8 358 69.6
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 6.2e-147 524.6 385 65.5
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 6.2e-147 524.6 363 69.7
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 8.1e-147 524.2 340 72.9
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.4e-146 523.5 385 65.2
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.4e-146 523.5 385 65.2
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.8e-146 523.1 383 66.3
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 3.1e-146 522.3 364 68.7
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 4.0e-146 521.9 348 72.7
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 4.0e-146 521.9 383 65.8
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 5.3e-146 521.5 385 66.0
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 9.0e-146 520.8 362 68.8
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.5e-145 520.0 347 72.6
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.5e-145 520.0 339 72.6
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 2.0e-145 519.6 383 65.5
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 2.0e-145 519.6 383 65.5
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 2.6e-145 519.2 385 65.7
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 3.4e-145 518.8 399 65.7
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 4.5e-145 518.5 359 68.8
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 4.5e-145 518.5 360 68.1
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 3.8e-144 515.4 389 64.0
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 3.8e-144 515.4 372 66.9
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 6.4e-144 514.6 356 69.9
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.9e-143 513.1 357 66.4
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.9e-143 513.1 363 67.8
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 5.4e-143 511.5 361 68.4
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.6e-142 510.0 362 66.6
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 4.6e-142 508.4 338 70.1
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 6.0e-142 508.1 360 66.7
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.0e-142 508.1 360 66.7
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 7.9e-142 507.7 357 69.5
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.1e-141 505.0 386 66.3
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.1e-141 505.0 360 68.3
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 3.3e-140 502.3 306 77.1
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 4.3e-140 501.9 349 68.2
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 7.4e-140 501.1 361 66.5
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.3e-139 500.4 385 64.2
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.6e-139 500.0 365 66.8
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.1e-139 497.7 345 67.2
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.8e-138 496.5 364 67.0
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 4.0e-138 495.4 358 65.1
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.2e-137 493.8 387 62.5
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 3.4e-137 492.3 356 67.4
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.5e-137 491.9 348 67.2
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 5.8e-137 491.5 355 67.6
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 5.8e-137 491.5 362 66.0
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 5.8e-137 491.5 340 68.5
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 9.9e-137 490.7 309 75.1
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.7e-136 490.0 322 69.9
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 4.9e-136 488.4 335 69.9
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 8.4e-136 487.6 340 68.8
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.5e-135 486.1 361 65.7
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 2.5e-135 486.1 366 66.1
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.3e-135 484.2 333 69.7
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 3.5e-134 482.3 340 69.4
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.7e-131 472.2 340 67.1
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.5e-129 466.8 345 65.5
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 7.6e-129 464.5 364 63.2
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.0e-128 464.2 357 63.9
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 2.1e-126 456.4 357 64.7
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.5e-124 450.3 367 62.4
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 5.3e-122 441.8 343 62.7
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 2.2e-120 436.4 367 59.1
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 8.5e-120 434.5 368 59.2
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 3.2e-119 432.6 338 62.4
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.1e-116 424.1 361 58.2
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.3e-115 420.6 359 57.1
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.7e-115 419.1 348 60.3
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 6.3e-115 418.3 320 61.9
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 4.5e-113 412.1 298 64.8
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 9.4e-111 404.4 332 60.2
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.2e-110 404.1 326 59.2
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.6e-108 396.4 236 75.4
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.7e-108 394.4 281 66.5
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 4.7e-102 375.6 346 54.9
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.0e-102 374.8 298 61.4
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.4e-101 374.0 363 54.3
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 6.7e-101 371.7 206 85.4
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 9.7e-100 367.9 316 57.6
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.3e-96 357.5 198 82.8
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.2e-96 356.7 198 80.8
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 3.5e-89 332.8 231 73.2
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.3e-83 314.3 219 67.1
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 9.1e-82 308.1 177 79.1
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 4.7e-78 295.8 269 55.8
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 9.8e-76 288.1 232 61.6
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.8e-74 283.9 401 39.9
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 5.4e-74 282.3 193 74.1
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 2.3e-69 266.9 344 42.7
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 7.5e-68 261.9 302 44.0
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 9.8e-68 261.5 229 56.8
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 2.8e-62 243.4 221 54.8
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 8.3e-59 231.9 352 38.1
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.5e-55 221.1 228 51.8
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 3.5e-49 199.9 380 34.7
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 2.9e-43 180.3 125 68.0
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.9e-31 141.0 148 49.3
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.0e-25 119.4 113 53.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 2.5e-23 114.0 109 53.2
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.7e-22 110.2 66 72.7
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 8.4e-19 99.0 57 75.4
unitig_8.g3591 Utricularia gibba HOM05D004580 ORTHO05D005917 1.0e-11 75.5 65 56.9
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 7.4e-07 59.3 53 54.7


User provided reference genes

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