Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 9.6e-158 560.5 357 100.0
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.4e-153 546.6 358 98.0
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.6e-144 516.5 357 92.4
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.7e-110 401.7 366 74.0
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 8.2e-101 371.3 281 85.4
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 6.8e-95 351.7 343 68.5
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 5.7e-94 348.6 361 67.0
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 7.5e-94 348.2 355 68.7
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 3.5e-91 339.3 361 66.5
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.5e-91 339.0 338 69.2
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 8.5e-90 334.7 360 65.8
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 3.2e-89 332.8 359 65.7
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 7.2e-89 331.6 287 77.4
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 1.0e-87 327.8 364 65.1
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.4e-87 327.4 287 76.7
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-87 327.4 358 64.5
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.8e-87 327.0 355 65.1
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 3.0e-87 326.2 357 63.9
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 4.0e-87 325.9 357 65.3
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 4.0e-87 325.9 357 65.3
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.0e-87 325.9 282 77.0
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 8.8e-87 324.7 353 66.3
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 3.4e-86 322.8 285 75.4
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 3.4e-86 322.8 357 65.8
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 7.5e-86 321.6 357 65.5
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 4.9e-85 318.9 380 60.5
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.4e-84 317.4 354 64.7
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.4e-84 317.4 368 62.5
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.4e-84 317.4 357 65.5
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 5.4e-84 315.5 286 74.5
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 7.0e-84 315.1 357 64.7
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 1.6e-83 313.9 283 75.3
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.0e-83 313.5 360 64.2
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 2.7e-83 313.2 287 74.2
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.5e-83 312.8 357 64.4
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 7.8e-83 311.6 360 63.1
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.7e-82 310.5 357 64.7
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 5.0e-82 308.9 286 74.5
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 1.9e-81 307.0 283 73.9
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 4.3e-81 305.8 360 62.8
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 4.3e-81 305.8 357 62.2
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 4.3e-81 305.8 287 72.8
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.2e-80 304.3 284 73.2
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 1.6e-80 303.9 282 73.8
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.6e-80 303.9 357 62.2
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 8.0e-80 301.6 285 73.0
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.0e-80 301.6 285 74.4
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.3e-79 300.1 285 74.0
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.0e-79 299.7 357 61.1
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 3.0e-79 299.7 285 72.6
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 4.0e-79 299.3 357 60.5
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 5.2e-79 298.9 357 61.1
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 6.8e-79 298.5 284 73.6
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.2e-78 297.7 359 61.3
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 3.4e-78 296.2 308 52.3
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 4.4e-78 295.8 284 72.5
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 9.8e-78 294.7 288 70.8
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.7e-77 293.9 357 63.9
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.7e-77 293.9 283 66.8
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 2.2e-77 293.5 283 70.7
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 3.7e-77 292.7 284 67.6
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 4.9e-77 292.4 283 62.2
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 4.9e-77 292.4 357 58.8
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 8.3e-77 291.6 282 72.0
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.1e-76 291.2 284 70.4
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.4e-76 290.8 358 59.5
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 1.8e-76 290.4 360 61.1
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 3.2e-76 289.7 357 63.9
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.2e-76 289.7 285 71.6
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 3.2e-76 289.7 355 60.3
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 4.1e-76 289.3 357 60.8
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 4.1e-76 289.3 351 58.7
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 5.4e-76 288.9 357 61.6
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 9.2e-76 288.1 357 64.4
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 4.6e-75 285.8 358 60.9
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 4.6e-75 285.8 284 69.4
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 5.9e-75 285.4 293 67.9
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 6.6e-74 282.0 357 61.9
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.9e-73 280.4 309 66.3
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 3.3e-73 279.6 348 60.1
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 4.3e-73 279.3 356 53.7
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 9.5e-73 278.1 286 67.5
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 3.6e-72 276.2 354 59.0
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 6.2e-72 275.4 357 57.4
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.4e-71 274.2 352 57.4
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 3.4e-70 269.6 283 66.4
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 7.5e-70 268.5 241 58.5
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-68 264.2 167 73.7
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 7.0e-68 261.9 162 74.7
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.7e-66 257.3 239 58.2
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.5e-65 254.2 313 63.6
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.5e-65 253.4 168 70.8
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 2.5e-65 253.4 353 56.9
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 9.5e-65 251.5 282 64.5
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.6e-64 250.8 292 55.8
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.1e-64 250.4 283 59.4
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 1.1e-63 248.1 354 55.6
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.3e-63 246.9 167 70.7
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 2.3e-63 246.9 285 63.5
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 3.1e-63 246.5 353 55.5
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 8.9e-63 245.0 355 53.5
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.2e-62 244.6 430 49.3
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 5.8e-62 242.3 279 66.3
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.3e-61 238.4 380 38.9
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.3e-61 238.4 284 62.7
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 7.1e-60 235.3 165 69.1
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 4.6e-59 232.6 279 63.1
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 3.9e-58 229.6 316 43.0
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 6.6e-58 228.8 244 70.5
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.6e-58 228.4 353 53.3
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 4.4e-54 216.1 198 57.6
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.4e-53 212.2 354 51.7
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 8.1e-48 195.3 278 58.3
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 2.4e-47 193.7 262 59.9
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.3e-42 177.9 194 77.8
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 3.0e-42 176.8 241 65.1
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 2.5e-41 173.7 194 48.5
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 3.3e-41 173.3 194 76.3
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 7.3e-41 172.2 162 53.7
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.3e-40 171.4 214 43.0
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 2.3e-34 150.6 117 58.1
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 3.7e-32 143.3 278 49.3
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 2.4e-31 140.6 286 49.3
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.9e-29 132.9 174 44.3
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.6e-27 126.3 171 42.7
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.8e-26 124.4 177 41.8
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 5.6e-25 119.4 163 74.2
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 6.9e-23 112.5 86 59.3
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 4.2e-20 103.2 107 48.6
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.3e-20 102.1 155 72.9
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.7e-18 95.9 91 53.8
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 2.2e-16 90.9 111 48.6
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 1.1e-15 88.6 65 64.6
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.2e-14 85.1 126 78.6
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 8.5e-13 79.0 132 59.1
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.4e-09 65.9 124 74.2
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.8e-07 61.2 40 67.5
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 6.9e-07 59.3 54 51.9
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 9.1e-07 58.9 44 56.8
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.5e-06 58.2 51 52.9


User provided reference genes

Program Settings