Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 4.0e-116 421.4 205 100.0
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 2.0e-115 419.1 205 99.0
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 4.9e-106 387.9 194 96.9
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 4.4e-99 364.8 195 89.7
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 3.8e-98 361.7 195 88.2
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.9e-97 359.4 195 88.2
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 2.2e-90 335.9 200 80.0
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 1.0e-87 327.0 193 79.3
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.4e-84 316.6 188 79.3
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.2e-83 313.5 192 79.2
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 3.4e-83 312.0 190 74.2
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 7.1e-81 304.3 193 72.0
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 4.6e-80 301.6 192 74.5
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.0e-79 300.4 191 72.3
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 1.8e-79 299.7 191 73.3
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 2.3e-79 299.3 195 72.3
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.0e-79 298.9 187 73.8
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 8.7e-79 297.4 194 70.1
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.5e-78 296.6 189 73.5
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 3.3e-78 295.4 192 72.4
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 3.3e-78 295.4 190 73.2
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 5.6e-78 294.7 187 73.3
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 2.8e-77 292.4 182 75.3
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 4.8e-77 291.6 194 69.1
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 4.8e-77 291.6 194 71.1
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 6.2e-77 291.2 190 68.9
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.4e-76 290.0 194 71.1
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 2.4e-76 289.3 192 70.8
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 5.3e-76 288.1 191 70.2
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 5.3e-76 288.1 193 72.0
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 1.5e-75 286.6 186 73.1
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 2.6e-75 285.8 186 72.6
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 4.5e-75 285.0 192 69.3
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 4.5e-75 285.0 195 70.8
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 2.9e-74 282.3 183 72.7
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 4.9e-74 281.6 201 66.2
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 4.9e-74 281.6 190 71.6
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.1e-73 280.4 199 67.8
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 1.1e-73 280.4 176 76.1
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 1.1e-73 280.4 200 68.0
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 2.4e-73 279.3 194 68.0
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 4.2e-73 278.5 190 68.4
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 4.2e-73 278.5 190 68.4
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 4.2e-73 278.5 176 75.6
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 7.1e-73 277.7 190 70.0
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 9.3e-73 277.3 177 76.8
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 9.3e-73 277.3 189 68.8
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 4.6e-72 275.0 190 67.9
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 7.9e-72 274.2 198 68.7
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 7.9e-72 274.2 191 68.1
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 7.9e-72 274.2 194 70.1
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 7.9e-72 274.2 192 66.1
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.3e-71 272.7 187 73.8
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 3.0e-71 272.3 200 66.0
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 3.9e-71 271.9 192 67.7
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 6.7e-71 271.2 193 67.4
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 6.7e-71 271.2 189 69.8
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 8.7e-71 270.8 181 71.8
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 8.7e-71 270.8 191 69.1
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 1.1e-70 270.4 184 70.7
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 1.5e-70 270.0 189 67.7
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 1.9e-70 269.6 200 66.5
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 2.5e-70 269.2 196 65.8
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.5e-70 269.2 192 64.1
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 3.3e-70 268.9 193 69.4
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 4.3e-70 268.5 202 64.9
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 5.6e-70 268.1 194 66.0
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 9.6e-70 267.3 189 68.3
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.3e-69 266.9 197 66.0
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 2.1e-69 266.2 193 67.4
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 1.1e-68 263.8 197 65.0
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.8e-68 263.1 197 65.0
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 2.4e-68 262.7 195 65.6
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 2.4e-68 262.7 191 67.0
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 3.1e-68 262.3 198 66.7
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 4.0e-68 261.9 187 66.3
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 5.3e-68 261.5 197 64.5
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 5.3e-68 261.5 197 64.5
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 2.0e-67 259.6 186 67.2
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 1.0e-66 257.3 188 65.4
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 1.3e-66 256.9 195 62.1
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 2.9e-66 255.8 202 62.9
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.1e-62 243.8 189 60.8
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 1.5e-62 243.4 186 60.8
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 1.5e-62 243.4 180 62.8
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 3.3e-62 242.3 190 62.6
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 2.4e-60 236.1 176 64.8
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 5.9e-59 231.5 193 57.5
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 5.9e-59 231.5 165 66.1
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 5.9e-59 231.5 149 71.1
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 9.7e-54 214.2 149 69.8
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.2e-51 207.2 182 56.6
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.9e-49 199.9 197 51.3
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 2.5e-49 199.5 192 52.6
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 1.4e-47 193.7 110 80.0
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 7.4e-46 188.0 191 50.8
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 1.7e-37 160.2 80 97.5
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.7e-34 150.2 103 68.0
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 9.4e-33 144.4 87 79.3
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 6.3e-29 131.7 78 80.8
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 3.5e-27 125.9 82 74.4
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.3e-23 113.2 92 60.9
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 6.3e-21 105.1 158 43.0
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 4.5e-19 99.0 77 59.7
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 4.5e-19 99.0 77 59.7
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 5.9e-19 98.6 92 53.3
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 8.6e-18 94.7 73 61.6
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 4.9e-13 79.0 171 32.7
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.4e-12 77.4 172 32.0
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.4e-12 77.4 185 30.3
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.4e-12 76.6 179 29.1
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 2.4e-12 76.6 186 28.0
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.1e-12 76.3 49 67.3
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 9.2e-12 74.7 194 31.4
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 1.6e-11 73.9 168 31.0
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 3.5e-11 72.8 171 30.4
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 3.5e-11 72.8 178 29.2
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 7.8e-11 71.6 166 29.5
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 7.8e-11 71.6 161 32.3
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.0e-10 71.2 184 27.7
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.0e-10 71.2 175 30.3
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.3e-10 70.9 170 28.8
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 1.7e-10 70.5 168 30.4
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 2.9e-10 69.7 165 30.3
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 3.8e-10 69.3 172 30.8
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 3.8e-10 69.3 141 28.4
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 5.0e-10 68.9 170 31.2
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 5.0e-10 68.9 161 31.1
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 8.6e-10 68.2 160 31.2
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.9e-09 67.0 148 29.7
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.9e-09 67.0 172 28.5
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 4.3e-09 65.9 177 26.6
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 5.6e-09 65.5 172 29.1
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 9.5e-09 64.7 175 28.6
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 1.6e-08 63.9 181 28.7
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 2.1e-08 63.5 173 25.4
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 6.1e-08 62.0 142 28.9
Cre06.g305500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.4e-07 60.8 147 27.9
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.8e-07 60.5 171 27.5
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.3e-07 60.1 140 31.4
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 8.9e-07 58.2 111 36.0
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 2.6e-06 56.6 144 29.2
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 3.4e-06 56.2 170 25.9


User provided reference genes

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