Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 3.8e-76 288.1 148 100.0
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 5.1e-73 277.7 147 97.3
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 2.0e-69 265.8 138 98.6
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 1.1e-59 233.4 148 80.4
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 3.5e-37 158.7 96 83.3
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 1.3e-36 156.8 141 56.7
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.3e-35 152.1 132 58.3
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 9.5e-35 150.6 133 61.7
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 1.8e-33 146.4 126 57.9
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 5.2e-33 144.8 121 60.3
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 5.8e-32 141.4 141 53.9
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 9.8e-32 140.6 138 50.7
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 4.9e-31 138.3 143 51.7
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 4.6e-29 131.7 145 51.0
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 1.0e-28 130.6 124 54.8
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.3e-28 130.2 132 49.2
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.0e-28 129.0 151 48.3
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 1.1e-27 127.1 143 49.0
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 1.1e-27 127.1 123 55.3
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 1.5e-27 126.7 138 48.6
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 1.9e-27 126.3 120 55.8
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 3.3e-27 125.6 91 64.8
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 9.5e-27 124.0 121 53.7
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 9.5e-27 124.0 138 47.1
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 8.0e-26 120.9 134 50.7
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 8.0e-26 120.9 123 52.0
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 1.4e-25 120.2 128 51.6
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 2.3e-25 119.4 115 54.8
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 6.8e-25 117.9 117 49.6
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 6.8e-25 117.9 122 50.0
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 2.0e-24 116.3 143 49.7
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 2.0e-24 116.3 127 49.6
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 2.6e-24 115.9 122 50.0
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 2.6e-24 115.9 143 44.8
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 4.4e-24 115.2 119 52.1
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 4.4e-24 115.2 137 48.2
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 4.4e-24 115.2 116 51.7
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 4.4e-24 115.2 116 52.6
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 5.8e-24 114.8 117 48.7
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 7.5e-24 114.4 140 45.7
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 7.5e-24 114.4 127 50.4
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 9.8e-24 114.0 120 53.3
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 9.8e-24 114.0 136 46.3
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 1.7e-23 113.2 135 45.2
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 2.2e-23 112.8 138 45.7
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 2.2e-23 112.8 120 53.3
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 2.2e-23 112.8 120 50.8
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 4.9e-23 111.7 138 44.9
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 4.9e-23 111.7 120 53.3
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 6.4e-23 111.3 135 47.4
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 1.4e-22 110.2 153 45.1
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 1.4e-22 110.2 112 48.2
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 2.4e-22 109.4 130 47.7
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 4.1e-22 108.6 106 52.8
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 4.1e-22 108.6 124 49.2
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 7.0e-22 107.8 126 46.0
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 1.2e-21 107.1 107 52.3
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 1.2e-21 107.1 129 46.5
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 1.6e-21 106.7 130 46.2
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 2.1e-21 106.3 132 46.2
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 3.5e-21 105.5 89 58.4
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 6.0e-21 104.8 113 48.7
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 6.0e-21 104.8 129 47.3
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 1.0e-20 104.0 129 48.8
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 1.3e-20 103.6 119 49.6
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 2.3e-20 102.8 139 43.9
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 3.0e-20 102.4 123 47.2
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 3.0e-20 102.4 123 47.2
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 3.0e-20 102.4 132 45.5
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 6.6e-20 101.3 139 41.7
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 1.1e-19 100.5 131 45.8
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 1.5e-19 100.1 122 45.1
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.9e-19 99.8 138 42.0
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 4.3e-19 98.6 122 47.5
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 4.3e-19 98.6 112 44.6
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 4.3e-19 98.6 115 47.8
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 5.6e-19 98.2 124 47.6
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 5.6e-19 98.2 121 47.9
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 9.5e-19 97.4 120 47.5
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 9.5e-19 97.4 138 44.2
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 2.1e-18 96.3 119 47.9
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 2.1e-18 96.3 122 46.7
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 2.1e-18 96.3 119 47.9
Nitab4.5_0000978g0250 Nicotiana tabacum HOM05D007217 ORTHO05D009092 2.8e-18 95.9 116 48.3
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 3.6e-18 95.5 89 53.9
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 3.6e-18 95.5 128 46.9
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 6.2e-18 94.7 84 59.5
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 8.1e-18 94.4 124 46.0
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 1.8e-17 93.2 114 47.4
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 1.8e-17 93.2 143 41.3
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.8e-17 93.2 122 44.3
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 2.3e-17 92.8 131 43.5
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 5.2e-17 91.7 127 44.1
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 6.8e-17 91.3 106 49.1
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 6.8e-17 91.3 127 44.1
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 1.3e-15 87.0 180 33.9
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 3.7e-15 85.5 103 48.5
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 1.1e-14 84.0 112 39.3
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 7.8e-13 77.8 121 40.5
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 2.3e-12 76.3 87 47.1
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 2.3e-12 76.3 87 47.1
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 3.0e-12 75.9 150 36.7
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 1.5e-11 73.6 53 69.8
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 9.5e-11 70.9 58 56.9
C02p14430 Brassica napus HOM05D007217 ORTHO05D009092 1.7e-07 60.1 61 50.8
BolC2t07567H Brassica oleracea HOM05D007217 ORTHO05D009092 1.7e-07 60.1 61 50.8
Peaxi162Scf00378g00634 Petunia axillaris HOM05D007217 ORTHO05D009092 1.7e-07 60.1 87 43.7
Zm00001eb228930 Zea mays HOM05D007217 ORTHO05D009092 1.7e-07 60.1 77 44.2
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 8.4e-07 57.8 98 39.8
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 8.4e-07 57.8 66 48.5
ATR0763G267 Amborella trichopoda HOM05D007217 ORTHO05D009092 1.4e-06 57.0 71 45.1


User provided reference genes

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