Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 5.8e-195 684.1 360 100.0
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 2.9e-194 681.8 360 99.4
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.2e-192 676.4 360 98.3
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 4.5e-179 631.3 361 93.4
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 5.4e-177 624.4 377 88.9
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.5e-176 621.7 377 88.6
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 5.1e-175 617.8 359 90.8
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 8.7e-167 590.5 346 89.0
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 7.4e-166 587.4 384 82.0
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 9.6e-166 587.0 348 88.2
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 2.8e-165 585.5 377 81.7
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 1.1e-164 583.6 341 89.4
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 1.1e-164 583.6 369 82.7
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.4e-164 583.2 368 82.6
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.8e-164 582.8 346 87.6
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 2.4e-164 582.4 346 87.3
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 6.9e-164 580.9 346 87.0
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 2.6e-163 578.9 368 82.1
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 3.4e-163 578.6 365 82.5
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 5.8e-163 577.8 336 88.1
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 5.8e-163 577.8 371 82.7
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 7.6e-163 577.4 367 83.7
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 6.5e-162 574.3 368 83.4
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 1.4e-161 573.2 346 86.1
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 1.9e-161 572.8 377 80.4
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 1.9e-161 572.8 369 83.7
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 1.9e-161 572.8 350 86.3
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 2.5e-161 572.4 368 83.2
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 2.1e-160 569.3 366 82.8
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 2.7e-160 568.9 367 81.2
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 3.5e-160 568.5 376 81.6
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 6.1e-160 567.8 368 82.6
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.8e-159 566.2 378 80.7
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.8e-159 566.2 364 81.0
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 2.3e-159 565.8 352 84.7
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 3.0e-159 565.5 367 80.9
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 3.9e-159 565.1 367 81.2
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 3.9e-159 565.1 346 85.5
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 6.7e-159 564.3 362 82.3
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 8.7e-159 563.9 351 84.3
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 8.7e-159 563.9 361 83.1
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 8.7e-159 563.9 361 83.1
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 3.3e-158 562.0 336 86.9
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 3.3e-158 562.0 361 81.4
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.3e-158 562.0 327 89.3
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 4.3e-158 561.6 385 79.0
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 4.3e-158 561.6 366 80.3
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 5.7e-158 561.2 366 80.1
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 5.7e-158 561.2 365 80.8
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 5.7e-158 561.2 366 80.9
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 5.7e-158 561.2 371 80.6
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 7.4e-158 560.8 366 80.9
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 9.7e-158 560.5 334 87.1
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 2.8e-157 558.9 366 80.3
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 3.7e-157 558.5 360 82.2
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 4.8e-157 558.1 359 81.1
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 4.8e-157 558.1 379 78.9
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 4.8e-157 558.1 367 79.8
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 6.3e-157 557.8 379 78.6
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 1.4e-156 556.6 365 80.8
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 1.8e-156 556.2 359 82.5
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 5.3e-156 554.7 367 81.7
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 6.9e-156 554.3 364 80.8
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 6.9e-156 554.3 364 81.0
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 9.0e-156 553.9 362 80.9
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 9.0e-156 553.9 380 79.5
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.2e-155 553.5 390 76.4
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 1.5e-155 553.1 361 81.7
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 2.0e-155 552.7 361 82.3
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 2.0e-155 552.7 371 79.5
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.0e-155 552.7 366 79.8
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.6e-155 552.4 390 76.2
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.6e-155 552.4 390 76.2
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 7.7e-155 550.8 362 79.6
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 7.7e-155 550.8 367 79.6
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.0e-154 550.4 387 77.8
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.0e-154 550.4 390 75.9
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.0e-154 550.4 390 75.9
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.3e-154 550.1 362 80.7
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 1.7e-154 549.7 375 78.4
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.7e-154 549.7 359 80.2
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 2.2e-154 549.3 363 81.0
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 2.2e-154 549.3 346 82.9
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 2.9e-154 548.9 363 80.7
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 2.9e-154 548.9 362 80.9
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 3.8e-154 548.5 362 80.4
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 3.8e-154 548.5 368 80.4
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 5.0e-154 548.1 364 79.9
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 5.0e-154 548.1 354 79.4
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 6.5e-154 547.7 390 76.2
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 8.5e-154 547.4 363 80.4
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 8.5e-154 547.4 365 79.5
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 8.5e-154 547.4 365 79.5
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 3.2e-153 545.4 340 84.4
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 4.2e-153 545.0 366 79.0
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 9.4e-153 543.9 327 83.8
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.6e-152 543.1 378 76.7
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 1.6e-152 543.1 365 78.6
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.8e-151 539.7 378 76.2
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 2.3e-151 539.3 362 80.1
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 6.7e-151 537.7 365 77.8
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 1.1e-150 537.0 334 81.1
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.5e-150 535.8 378 75.4
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 4.3e-150 535.0 297 91.9
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 4.3e-150 535.0 377 78.2
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 4.8e-149 531.6 356 78.4
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 2.4e-148 529.3 348 81.6
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.9e-146 522.3 384 75.0
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 1.0e-143 513.8 307 85.3
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.3e-142 508.8 378 74.6
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 5.7e-142 508.1 297 85.9
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 9.7e-142 507.3 361 76.2
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 6.3e-141 504.6 297 86.9
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 2.4e-140 502.7 364 73.9
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 5.9e-139 498.0 367 74.4
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 8.5e-138 494.2 334 76.3
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 2.5e-137 492.7 336 76.8
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 8.0e-136 487.6 362 71.8
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.3e-133 480.3 324 77.8
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 7.7e-131 471.1 318 79.2
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 6.5e-130 468.0 314 79.9
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 1.4e-127 460.3 354 71.5
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 1.7e-125 453.4 364 67.0
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 3.7e-125 452.2 353 67.7
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 8.0e-120 434.5 246 92.3
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 1.3e-117 427.2 272 82.7
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.8e-116 423.3 367 68.4
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.7e-114 416.8 321 69.2
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.5e-107 392.5 316 69.0
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 2.9e-106 389.4 366 57.1
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 2.9e-106 389.4 279 69.2
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 9.5e-97 357.8 326 58.9
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 6.4e-93 345.1 198 90.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.4e-79 300.8 198 80.3
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.4e-79 300.8 198 80.3
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 2.4e-76 290.0 166 88.6
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.2e-69 266.9 357 50.4
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.4e-63 247.7 294 45.2
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.0e-58 231.5 293 44.4
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 9.6e-57 224.9 129 87.6
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.0e-55 219.5 154 77.3
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.9e-53 213.4 324 41.0
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.3e-50 204.5 178 65.2
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 3.7e-48 196.4 216 58.8
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.2e-40 170.6 149 64.4
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.8e-39 167.5 213 50.7
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 1.9e-36 157.5 125 72.0
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 1.2e-30 138.3 80 88.8
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.4e-26 124.8 93 65.6
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 1.8e-18 97.8 75 70.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 1.4e-15 88.2 48 93.8
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 2.7e-14 84.0 90 53.3
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 1.5e-12 78.2 64 65.6
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.1e-11 74.3 52 76.9
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 1.2e-09 68.6 43 79.1
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 1.5e-09 68.2 42 66.7


User provided reference genes

Program Settings